Analysis of interatomic Contacts of Structural Units in PDB entry:
6S5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S5T entry

There are 2 chains in PDB entry 6S5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 99LYS 850
B
 ASP 3MET 146
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6S5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
135 158Right-handed alpha
Helix 2
AA2
A
164 182Right-handed alpha
Helix 3
AA3
A
184 206Right-handed alpha
Helix 4
AA4
A
206 220Right-handed alpha
Helix 5
AA5
A
230 235Right-handed 310
Helix 6
AA6
A
236 246Right-handed alpha
Helix 7
AA7
A
251 261Right-handed alpha
Helix 8
AA8
A
265 269Right-handed 310
Helix 9
AA9
A
270 281Right-handed alpha
Helix 10
AB1
A
303 311Right-handed alpha
Helix 11
AB2
A
342 344Right-handed 310
Helix 12
AB3
A
374 391Right-handed alpha
Helix 13
AB4
A
391 396Right-handed alpha
Helix 14
AB5
A
412 419Right-handed alpha
Helix 15
AB6
A
420 422Right-handed 310
Helix 16
AB7
A
424 432Right-handed alpha
Helix 17
AB8
A
446 450Right-handed 310
Helix 18
AB9
A
459 481Right-handed alpha
Helix 19
AC1
A
525 530Right-handed alpha
Helix 20
AC2
A
550 553Right-handed 310
Helix 21
AC3
A
556 563Right-handed alpha
Helix 22
AC4
A
563 568Right-handed alpha
Helix 23
AC5
A
572 576Right-handed 310
Helix 24
AC6
A
587 592Right-handed 310
Helix 25
AC7
A
593 623Right-handed alpha
Helix 26
AC8
A
627 654Right-handed alpha
Helix 27
AC9
A
657 667Right-handed alpha
Helix 28
AD1
A
670 682Right-handed alpha
Helix 29
AD2
A
685 689Right-handed 310
Helix 30
AD3
A
690 702Right-handed alpha
Helix 31
AD4
A
738 774Right-handed alpha
Helix 32
AD5
A
780 793Right-handed alpha
Helix 33
AD6
A
800 817Right-handed alpha
Helix 34
AD7
A
826 846Right-handed alpha
Helix 35
AD8
B
6 20Right-handed alpha
Helix 36
AD9
B
32 40Right-handed alpha
Helix 37
AE1
B
45 57Right-handed alpha
Helix 38
AE2
B
65 77Right-handed alpha
Helix 39
AE3
B
82 92Right-handed alpha
Helix 40
AE4
B
102 113Right-handed alpha
Helix 41
AE5
B
118 128Right-handed alpha
Helix 42
AE6
B
139 146Right-handed alpha
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There are 8 sheets in PDB entry 6S5T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
316 320anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
127 133anti-parallel
Strand 3
A
583 585parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
297 300anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
353 357anti-parallel
Strand 3
A
363 368anti-parallel
Strand 4
A
437 445anti-parallel
Strand 5
A
403 406anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 350first strand
Strand 2
A
353 357anti-parallel
Strand 3
A
363 368anti-parallel
Strand 4
A
437 445anti-parallel
Strand 5
A
409 411anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 483first strand
Strand 2
A
547 548anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
63 64anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
137 138anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il