Analysis of interatomic Contacts of Structural Units in PDB entry:
6S5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S5U entry

There are 6 chains in PDB entry 6S5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	LYS 305
C	PRO 5	LYS 305
B	SER 4	TYR 304
D	PRO 5	LYS 305
E	PRO 5	TYR 304
F	PRO 5	LYS 305

There are 30 helices in PDB entry 6S5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	64	Right-handed alpha
Helix 2	AA2	A	68	70	Right-handed 310
Helix 3	AA3	A	71	76	Right-handed alpha
Helix 4	AA4	A	146	148	Right-handed 310
Helix 5	AA5	A	149	156	Right-handed alpha
Helix 6	AA6	C	59	64	Right-handed alpha
Helix 7	AA7	C	68	70	Right-handed 310
Helix 8	AA8	C	71	76	Right-handed alpha
Helix 9	AA9	C	146	148	Right-handed 310
Helix 10	AB1	C	149	156	Right-handed alpha
Helix 11	AB2	B	59	64	Right-handed alpha
Helix 12	AB3	B	68	70	Right-handed 310
Helix 13	AB4	B	71	76	Right-handed alpha
Helix 14	AB5	B	146	148	Right-handed 310
Helix 15	AB6	B	149	156	Right-handed alpha
Helix 16	AB7	D	59	64	Right-handed alpha
Helix 17	AB8	D	68	70	Right-handed 310
Helix 18	AB9	D	71	76	Right-handed alpha
Helix 19	AC1	D	146	148	Right-handed 310
Helix 20	AC2	D	149	156	Right-handed alpha
Helix 21	AC3	E	59	64	Right-handed alpha
Helix 22	AC4	E	68	70	Right-handed 310
Helix 23	AC5	E	71	76	Right-handed alpha
Helix 24	AC6	E	146	148	Right-handed 310
Helix 25	AC7	E	149	156	Right-handed alpha
Helix 26	AC8	F	59	64	Right-handed alpha
Helix 27	AC9	F	68	70	Right-handed 310
Helix 28	AD1	F	71	76	Right-handed alpha
Helix 29	AD2	F	146	148	Right-handed 310
Helix 30	AD3	F	149	156	Right-handed alpha

There are 42 sheets in PDB entry 6S5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	12	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	287	291	anti-parallel
Strand 4	A	280	284	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	29	32	anti-parallel
Strand 3	A	38	42	anti-parallel
Strand 4	A	47	53	anti-parallel
Strand 5	A	107	108	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	84	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	98	102	anti-parallel
Strand 4	A	110	113	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	119	120	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	129	first strand
Strand 2	A	136	140	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	173	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	194	199	anti-parallel
Strand 3	A	204	209	anti-parallel
Strand 4	A	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	232	first strand
Strand 2	A	238	245	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	263	268	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	12	first strand
Strand 2	C	297	302	anti-parallel
Strand 3	C	287	291	anti-parallel
Strand 4	C	280	284	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	29	32	anti-parallel
Strand 3	C	38	42	anti-parallel
Strand 4	C	47	53	anti-parallel
Strand 5	C	107	108	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	84	first strand
Strand 2	C	89	94	anti-parallel
Strand 3	C	98	102	anti-parallel
Strand 4	C	110	113	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	116	first strand
Strand 2	C	119	120	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	129	first strand
Strand 2	C	136	140	anti-parallel
Strand 3	C	161	166	anti-parallel
Strand 4	C	173	180	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	188	first strand
Strand 2	C	194	199	anti-parallel
Strand 3	C	204	209	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	232	first strand
Strand 2	C	238	245	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	263	268	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	297	302	anti-parallel
Strand 3	B	287	291	anti-parallel
Strand 4	B	280	284	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	38	42	anti-parallel
Strand 4	B	47	53	anti-parallel
Strand 5	B	107	108	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	84	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	98	102	anti-parallel
Strand 4	B	110	113	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	119	120	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	129	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	161	166	anti-parallel
Strand 4	B	173	180	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	B	194	199	anti-parallel
Strand 3	B	204	209	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	232	first strand
Strand 2	B	238	245	anti-parallel
Strand 3	B	250	257	anti-parallel
Strand 4	B	263	268	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	12	first strand
Strand 2	D	297	302	anti-parallel
Strand 3	D	287	291	anti-parallel
Strand 4	D	280	284	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	29	32	anti-parallel
Strand 3	D	38	42	anti-parallel
Strand 4	D	47	53	anti-parallel
Strand 5	D	107	108	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	84	first strand
Strand 2	D	89	94	anti-parallel
Strand 3	D	98	102	anti-parallel
Strand 4	D	110	113	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	119	120	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	129	first strand
Strand 2	D	136	140	anti-parallel
Strand 3	D	161	166	anti-parallel
Strand 4	D	173	180	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	188	first strand
Strand 2	D	194	199	anti-parallel
Strand 3	D	204	209	anti-parallel
Strand 4	D	218	223	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	232	first strand
Strand 2	D	238	245	anti-parallel
Strand 3	D	250	257	anti-parallel
Strand 4	D	263	268	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	12	first strand
Strand 2	E	297	302	anti-parallel
Strand 3	E	287	291	anti-parallel
Strand 4	E	280	284	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	23	first strand
Strand 2	E	29	32	anti-parallel
Strand 3	E	38	42	anti-parallel
Strand 4	E	47	53	anti-parallel
Strand 5	E	107	108	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	84	first strand
Strand 2	E	89	94	anti-parallel
Strand 3	E	98	102	anti-parallel
Strand 4	E	110	113	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	115	116	first strand
Strand 2	E	119	120	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	129	first strand
Strand 2	E	136	140	anti-parallel
Strand 3	E	161	166	anti-parallel
Strand 4	E	173	180	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	188	first strand
Strand 2	E	194	199	anti-parallel
Strand 3	E	204	209	anti-parallel
Strand 4	E	218	223	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	232	first strand
Strand 2	E	238	245	anti-parallel
Strand 3	E	250	257	anti-parallel
Strand 4	E	263	268	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	12	first strand
Strand 2	F	297	302	anti-parallel
Strand 3	F	287	291	anti-parallel
Strand 4	F	280	284	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	23	first strand
Strand 2	F	29	32	anti-parallel
Strand 3	F	38	42	anti-parallel
Strand 4	F	47	53	anti-parallel
Strand 5	F	107	108	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	84	first strand
Strand 2	F	89	94	anti-parallel
Strand 3	F	98	102	anti-parallel
Strand 4	F	110	113	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	119	120	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	129	first strand
Strand 2	F	136	140	anti-parallel
Strand 3	F	161	166	anti-parallel
Strand 4	F	173	180	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	188	first strand
Strand 2	F	194	199	anti-parallel
Strand 3	F	204	209	anti-parallel
Strand 4	F	218	223	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	227	232	first strand
Strand 2	F	238	245	anti-parallel
Strand 3	F	250	257	anti-parallel
Strand 4	F	263	268	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S5U