Analysis of interatomic Contacts of Structural Units in PDB entry:
6S5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S5Y entry

There are 8 chains in PDB entry 6S5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 225	THR 387
B	PRO 226	ARG 386
C	PRO 226	ARG 386
D	PRO 226	ARG 386
E	PRO 226	ARG 386
F	PRO 226	ARG 386
G	PRO 226	ARG 386
H	PRO 226	PRO 385

There are 42 helices in PDB entry 6S5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	229	234	Right-handed alpha
Helix 2	AA2	A	250	255	Right-handed 310
Helix 3	AA3	A	257	261	Right-handed 310
Helix 4	AA4	A	308	313	Right-handed alpha
Helix 5	AA5	A	329	334	Right-handed 310
Helix 6	AA6	B	229	234	Right-handed alpha
Helix 7	AA7	B	250	255	Right-handed 310
Helix 8	AA8	B	257	261	Right-handed 310
Helix 9	AA9	B	308	313	Right-handed alpha
Helix 10	AB1	B	329	334	Right-handed 310
Helix 11	AB2	C	250	255	Right-handed 310
Helix 12	AB3	C	257	261	Right-handed 310
Helix 13	AB4	C	308	313	Right-handed alpha
Helix 14	AB5	C	329	334	Right-handed 310
Helix 15	AB6	C	336	340	Right-handed 310
Helix 16	AB7	D	229	234	Right-handed alpha
Helix 17	AB8	D	250	255	Right-handed 310
Helix 18	AB9	D	257	261	Right-handed 310
Helix 19	AC1	D	308	313	Right-handed alpha
Helix 20	AC2	E	229	234	Right-handed alpha
Helix 21	AC3	E	250	255	Right-handed 310
Helix 22	AC4	E	257	261	Right-handed 310
Helix 23	AC5	E	308	313	Right-handed alpha
Helix 24	AC6	E	329	334	Right-handed 310
Helix 25	AC7	E	336	340	Right-handed 310
Helix 26	AC8	F	229	234	Right-handed alpha
Helix 27	AC9	F	250	255	Right-handed 310
Helix 28	AD1	F	257	261	Right-handed 310
Helix 29	AD2	F	308	313	Right-handed alpha
Helix 30	AD3	F	329	334	Right-handed 310
Helix 31	AD4	F	336	340	Right-handed 310
Helix 32	AD5	G	229	234	Right-handed alpha
Helix 33	AD6	G	250	255	Right-handed 310
Helix 34	AD7	G	257	261	Right-handed 310
Helix 35	AD8	G	308	313	Right-handed alpha
Helix 36	AD9	G	329	334	Right-handed 310
Helix 37	AE1	G	336	340	Right-handed 310
Helix 38	AE2	H	229	234	Right-handed alpha
Helix 39	AE3	H	250	255	Right-handed 310
Helix 40	AE4	H	257	261	Right-handed 310
Helix 41	AE5	H	308	313	Right-handed alpha
Helix 42	AE6	H	329	334	Right-handed 310

There are 16 sheets in PDB entry 6S5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	244	first strand
Strand 2	A	294	304	parallel
Strand 3	A	279	288	anti-parallel
Strand 4	A	266	269	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	323	first strand
Strand 2	A	373	383	parallel
Strand 3	A	358	367	anti-parallel
Strand 4	A	345	348	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	294	304	parallel
Strand 3	B	279	288	anti-parallel
Strand 4	B	266	269	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	323	first strand
Strand 2	B	373	383	parallel
Strand 3	B	358	367	anti-parallel
Strand 4	B	345	348	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	244	first strand
Strand 2	C	294	304	parallel
Strand 3	C	279	288	anti-parallel
Strand 4	C	266	269	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	323	first strand
Strand 2	C	373	383	parallel
Strand 3	C	358	367	anti-parallel
Strand 4	C	345	348	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	244	first strand
Strand 2	D	294	304	parallel
Strand 3	D	279	288	anti-parallel
Strand 4	D	266	269	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	323	first strand
Strand 2	D	373	383	parallel
Strand 3	D	358	367	anti-parallel
Strand 4	D	345	348	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	244	first strand
Strand 2	E	294	304	parallel
Strand 3	E	279	288	anti-parallel
Strand 4	E	266	269	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	323	first strand
Strand 2	E	373	383	parallel
Strand 3	E	358	367	anti-parallel
Strand 4	E	345	348	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	241	244	first strand
Strand 2	F	294	304	parallel
Strand 3	F	279	288	anti-parallel
Strand 4	F	266	269	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	320	323	first strand
Strand 2	F	373	383	parallel
Strand 3	F	358	367	anti-parallel
Strand 4	F	345	348	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	241	244	first strand
Strand 2	G	294	304	parallel
Strand 3	G	279	288	anti-parallel
Strand 4	G	266	269	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	320	323	first strand
Strand 2	G	373	383	parallel
Strand 3	G	358	367	anti-parallel
Strand 4	G	345	348	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	241	244	first strand
Strand 2	H	294	304	parallel
Strand 3	H	279	288	anti-parallel
Strand 4	H	266	269	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	320	323	first strand
Strand 2	H	373	383	parallel
Strand 3	H	358	367	anti-parallel
Strand 4	H	345	348	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S5Y