Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S6D entry

There are 4 chains in PDB entry 6S6D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	VAL 303
C	SER 59	VAL 369
B	THR 4	VAL 303
D	SER 60	GLU 368

There are 44 helices in PDB entry 6S6D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	29	Right-handed alpha
Helix 2	AA2	A	32	39	Right-handed 310
Helix 3	AA3	A	66	74	Right-handed alpha
Helix 4	AA4	A	77	83	Right-handed alpha
Helix 5	AA5	A	98	117	Right-handed alpha
Helix 6	AA6	A	128	132	Right-handed 310
Helix 7	AA7	A	133	135	Right-handed 310
Helix 8	AA8	A	136	152	Right-handed alpha
Helix 9	AA9	A	167	179	Right-handed alpha
Helix 10	AB1	A	183	199	Right-handed alpha
Helix 11	AB2	A	226	246	Right-handed alpha
Helix 12	AB3	A	282	299	Right-handed alpha
Helix 13	AB4	C	73	83	Right-handed alpha
Helix 14	AB5	C	87	92	Right-handed 310
Helix 15	AB6	C	150	168	Right-handed alpha
Helix 16	AB7	C	179	183	Right-handed 310
Helix 17	AB8	C	184	206	Right-handed alpha
Helix 18	AB9	C	223	236	Right-handed alpha
Helix 19	AC1	C	239	253	Right-handed alpha
Helix 20	AC2	C	278	299	Right-handed alpha
Helix 21	AC3	C	343	347	Right-handed alpha
Helix 22	AC4	C	348	367	Right-handed alpha
Helix 23	AC5	B	19	29	Right-handed alpha
Helix 24	AC6	B	33	37	Right-handed 310
Helix 25	AC7	B	66	75	Right-handed alpha
Helix 26	AC8	B	77	83	Right-handed alpha
Helix 27	AC9	B	98	117	Right-handed alpha
Helix 28	AD1	B	129	132	Right-handed 310
Helix 29	AD2	B	133	135	Right-handed 310
Helix 30	AD3	B	136	152	Right-handed alpha
Helix 31	AD4	B	167	179	Right-handed alpha
Helix 32	AD5	B	183	198	Right-handed alpha
Helix 33	AD6	B	226	245	Right-handed alpha
Helix 34	AD7	B	282	300	Right-handed alpha
Helix 35	AD8	D	73	82	Right-handed alpha
Helix 36	AD9	D	133	137	Right-handed 310
Helix 37	AE1	D	154	162	Right-handed alpha
Helix 38	AE2	D	162	168	Right-handed alpha
Helix 39	AE3	D	185	202	Right-handed alpha
Helix 40	AE4	D	223	235	Right-handed alpha
Helix 41	AE5	D	239	255	Right-handed alpha
Helix 42	AE6	D	278	299	Right-handed alpha
Helix 43	AE7	D	343	348	Right-handed alpha
Helix 44	AE8	D	348	367	Right-handed alpha

There are 7 sheets in PDB entry 6S6D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	52	first strand
Strand 2	A	56	63	anti-parallel
Strand 3	A	6	13	parallel
Strand 4	A	85	93	parallel
Strand 5	A	121	127	parallel
Strand 6	A	158	161	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	218	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	270	276	anti-parallel
Strand 4	A	259	265	anti-parallel
Strand 5	A	249	256	anti-parallel
Strand 6	C	315	320	anti-parallel
Strand 7	C	324	330	anti-parallel
Strand 8	C	335	342	anti-parallel
Strand 9	C	258	263	anti-parallel
Strand 10	C	268	272	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	63	67	parallel
Strand 3	C	139	145	parallel
Strand 4	C	172	178	parallel
Strand 5	C	213	217	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	56	63	anti-parallel
Strand 3	B	49	52	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	56	63	anti-parallel
Strand 3	B	6	14	parallel
Strand 4	B	85	93	parallel
Strand 5	B	121	127	parallel
Strand 6	B	158	162	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	218	first strand
Strand 2	B	202	207	anti-parallel
Strand 3	B	270	276	anti-parallel
Strand 4	B	260	265	anti-parallel
Strand 5	B	249	255	anti-parallel
Strand 6	D	315	320	anti-parallel
Strand 7	D	324	330	anti-parallel
Strand 8	D	335	342	anti-parallel
Strand 9	D	259	263	anti-parallel
Strand 10	D	269	271	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	139	145	parallel
Strand 3	D	172	178	parallel
Strand 4	D	213	217	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S6D

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6D