Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S6F entry

There are 2 chains in PDB entry 6S6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16ARG 375
B
 VAL 6ARG 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6S6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 46Right-handed alpha
Helix 2
AA2
A
47 58Right-handed alpha
Helix 3
AA3
A
62 75Right-handed alpha
Helix 4
AA4
A
80 88Right-handed alpha
Helix 5
AA5
A
95 111Right-handed alpha
Helix 6
AA6
A
115 117Right-handed 310
Helix 7
AA7
A
118 144Right-handed alpha
Helix 8
AA8
A
155 166Right-handed alpha
Helix 9
AA9
A
170 184Right-handed alpha
Helix 10
AB1
A
190 201Right-handed alpha
Helix 11
AB2
A
205 218Right-handed alpha
Helix 12
AB3
A
224 234Right-handed alpha
Helix 13
AB4
A
238 252Right-handed alpha
Helix 14
AB5
A
268 286Right-handed alpha
Helix 15
AB6
A
289 306Right-handed alpha
Helix 16
AB7
A
311 322Right-handed alpha
Helix 17
AB8
A
325 327Right-handed 310
Helix 18
AB9
A
328 351Right-handed alpha
Helix 19
AC1
A
371 375Right-handed 310
Helix 20
AC2
B
9 13Right-handed 310
Helix 21
AC3
B
39 46Right-handed alpha
Helix 22
AC4
B
47 58Right-handed alpha
Helix 23
AC5
B
62 75Right-handed alpha
Helix 24
AC6
B
80 88Right-handed alpha
Helix 25
AC7
B
95 111Right-handed alpha
Helix 26
AC8
B
115 117Right-handed 310
Helix 27
AC9
B
118 144Right-handed alpha
Helix 28
AD1
B
155 166Right-handed alpha
Helix 29
AD2
B
170 184Right-handed alpha
Helix 30
AD3
B
190 201Right-handed alpha
Helix 31
AD4
B
205 218Right-handed alpha
Helix 32
AD5
B
224 234Right-handed alpha
Helix 33
AD6
B
238 252Right-handed alpha
Helix 34
AD7
B
268 286Right-handed alpha
Helix 35
AD8
B
289 306Right-handed alpha
Helix 36
AD9
B
311 322Right-handed alpha
Helix 37
AE1
B
325 327Right-handed 310
Helix 38
AE2
B
328 351Right-handed alpha
Helix 39
AE3
B
371 375Right-handed 310
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There are 4 sheets in PDB entry 6S6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
B
359 361parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
32 34anti-parallel
Strand 3
A
37 38anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 361first strand
Strand 2
B
16 20parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 25first strand
Strand 2
B
32 34anti-parallel
Strand 3
B
37 38anti-parallel
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