Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S6L entry

There are 3 chains in PDB entry 6S6L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 20	GLY 531
B	SER 17	GLY 531
C	VAL 30	GLY 531

There are 25 helices in PDB entry 6S6L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	42	Right-handed alpha
Helix 2	AA2	A	54	58	Right-handed 310
Helix 3	AA3	A	85	88	Right-handed 310
Helix 4	AA4	A	89	96	Right-handed alpha
Helix 5	AA5	A	139	144	Right-handed 310
Helix 6	AA6	A	236	240	Right-handed 310
Helix 7	AA7	A	282	286	Right-handed 310
Helix 8	AA8	A	454	465	Right-handed alpha
Helix 9	AA9	B	37	42	Right-handed alpha
Helix 10	AB1	B	43	45	Right-handed 310
Helix 11	AB2	B	52	58	Right-handed 310
Helix 12	AB3	B	85	88	Right-handed 310
Helix 13	AB4	B	89	96	Right-handed alpha
Helix 14	AB5	B	97	99	Right-handed 310
Helix 15	AB6	B	137	142	Right-handed alpha
Helix 16	AB7	B	236	240	Right-handed 310
Helix 17	AB8	B	282	286	Right-handed 310
Helix 18	AB9	B	454	465	Right-handed alpha
Helix 19	AC1	C	37	42	Right-handed alpha
Helix 20	AC2	C	54	58	Right-handed 310
Helix 21	AC3	C	85	88	Right-handed 310
Helix 22	AC4	C	89	96	Right-handed alpha
Helix 23	AC5	C	97	99	Right-handed 310
Helix 24	AC6	C	137	142	Right-handed alpha
Helix 25	AC7	C	454	465	Right-handed alpha

There are 19 sheets in PDB entry 6S6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	201	218	anti-parallel
Strand 3	A	99	113	anti-parallel
Strand 4	A	157	161	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	69	first strand
Strand 2	A	201	218	anti-parallel
Strand 3	A	99	113	anti-parallel
Strand 4	A	170	171	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	121	127	anti-parallel
Strand 4	A	146	150	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	427	435	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	507	508	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	427	435	anti-parallel
Strand 3	A	497	500	anti-parallel
Strand 4	A	485	492	anti-parallel
Strand 5	A	472	479	anti-parallel
Strand 6	A	513	521	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	275	276	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	298	first strand
Strand 2	A	302	310	anti-parallel
Strand 3	A	373	378	anti-parallel
Strand 4	A	350	360	anti-parallel
Strand 5	A	332	342	anti-parallel
Strand 6	A	389	402	anti-parallel
Strand 7	A	289	298	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	69	first strand
Strand 2	B	201	209	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	157	161	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	83	first strand
Strand 2	B	180	191	anti-parallel
Strand 3	B	118	127	anti-parallel
Strand 4	B	146	150	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	101	103	anti-parallel
Strand 3	B	214	215	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	253	first strand
Strand 2	B	431	436	anti-parallel
Strand 3	B	447	451	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	298	first strand
Strand 2	B	302	309	anti-parallel
Strand 3	B	373	378	anti-parallel
Strand 4	B	350	358	anti-parallel
Strand 5	B	332	342	anti-parallel
Strand 6	B	389	402	anti-parallel
Strand 7	B	289	298	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	429	first strand
Strand 2	B	496	500	anti-parallel
Strand 3	B	485	492	anti-parallel
Strand 4	B	472	478	anti-parallel
Strand 5	B	514	521	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	69	first strand
Strand 2	C	201	215	anti-parallel
Strand 3	C	101	113	anti-parallel
Strand 4	C	157	161	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	69	first strand
Strand 2	C	201	215	anti-parallel
Strand 3	C	101	113	anti-parallel
Strand 4	C	170	171	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	180	187	anti-parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	146	150	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	451	first strand
Strand 2	C	427	436	anti-parallel
Strand 3	C	251	254	anti-parallel
Strand 4	C	507	509	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	451	first strand
Strand 2	C	427	436	anti-parallel
Strand 3	C	496	500	anti-parallel
Strand 4	C	485	492	anti-parallel
Strand 5	C	472	479	anti-parallel
Strand 6	C	513	521	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	298	first strand
Strand 2	C	302	310	anti-parallel
Strand 3	C	373	378	anti-parallel
Strand 4	C	350	358	anti-parallel
Strand 5	C	332	342	anti-parallel
Strand 6	C	389	402	anti-parallel
Strand 7	C	289	298	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S6L

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6L