Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S6Q entry

There are 2 chains in PDB entry 6S6Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 27	ASN 859
B	LEU 27	ASN 502

There are 67 helices in PDB entry 6S6Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	40	Right-handed alpha
Helix 2	AA2	A	56	60	Right-handed 310
Helix 3	AA3	A	88	94	Right-handed 310
Helix 4	AA4	A	112	117	Right-handed 310
Helix 5	AA5	A	136	142	Right-handed 310
Helix 6	AA6	A	160	166	Right-handed 310
Helix 7	AA7	A	184	188	Right-handed 310
Helix 8	AA8	A	208	214	Right-handed 310
Helix 9	AA9	A	232	238	Right-handed 310
Helix 10	AB1	A	256	262	Right-handed 310
Helix 11	AB2	A	280	286	Right-handed 310
Helix 12	AB3	A	304	310	Right-handed 310
Helix 13	AB4	A	353	359	Right-handed 310
Helix 14	AB5	A	377	383	Right-handed 310
Helix 15	AB6	A	401	407	Right-handed 310
Helix 16	AB7	A	425	431	Right-handed 310
Helix 17	AB8	A	449	455	Right-handed 310
Helix 18	AB9	A	473	479	Right-handed 310
Helix 19	AC1	A	497	503	Right-handed 310
Helix 20	AC2	A	521	527	Right-handed 310
Helix 21	AC3	A	545	551	Right-handed 310
Helix 22	AC4	A	568	572	Right-handed 310
Helix 23	AC5	A	592	598	Right-handed 310
Helix 24	AC6	A	616	622	Right-handed 310
Helix 25	AC7	A	640	646	Right-handed 310
Helix 26	AC8	A	664	670	Right-handed 310
Helix 27	AC9	A	688	694	Right-handed 310
Helix 28	AD1	A	712	718	Right-handed 310
Helix 29	AD2	A	736	742	Right-handed 310
Helix 30	AD3	A	760	766	Right-handed 310
Helix 31	AD4	A	785	791	Right-handed 310
Helix 32	AD5	A	833	837	Right-handed 310
Helix 33	AD6	A	840	845	Right-handed 310
Helix 34	AD7	B	28	40	Right-handed alpha
Helix 35	AD8	B	56	60	Right-handed 310
Helix 36	AD9	B	88	94	Right-handed 310
Helix 37	AE1	B	112	118	Right-handed 310
Helix 38	AE2	B	136	142	Right-handed 310
Helix 39	AE3	B	160	166	Right-handed 310
Helix 40	AE4	B	184	188	Right-handed 310
Helix 41	AE5	B	208	214	Right-handed 310
Helix 42	AE6	B	232	238	Right-handed 310
Helix 43	AE7	B	256	262	Right-handed 310
Helix 44	AE8	B	280	286	Right-handed 310
Helix 45	AE9	B	304	310	Right-handed 310
Helix 46	AF1	B	353	359	Right-handed 310
Helix 47	AF2	B	377	383	Right-handed 310
Helix 48	AF3	B	401	407	Right-handed 310
Helix 49	AF4	B	425	431	Right-handed 310
Helix 50	AF5	B	449	455	Right-handed 310
Helix 51	AF6	B	473	479	Right-handed 310
Helix 52	AF7	B	497	503	Right-handed 310
Helix 53	AF8	B	521	527	Right-handed 310
Helix 54	AF9	B	545	551	Right-handed 310
Helix 55	AG1	B	568	574	Right-handed 310
Helix 56	AG2	B	592	598	Right-handed 310
Helix 57	AG3	B	616	622	Right-handed 310
Helix 58	AG4	B	640	646	Right-handed 310
Helix 59	AG5	B	664	670	Right-handed 310
Helix 60	AG6	B	688	694	Right-handed 310
Helix 61	AG7	B	712	718	Right-handed 310
Helix 62	AG8	B	736	742	Right-handed 310
Helix 63	AG9	B	760	766	Right-handed 310
Helix 64	AH1	B	785	791	Right-handed 310
Helix 65	AH2	B	809	814	Right-handed alpha
Helix 66	AH3	B	833	838	Right-handed 310
Helix 67	AH4	B	840	845	Right-handed 310

There are 17 sheets in PDB entry 6S6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 33 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	65	first strand
Strand 2	A	73	77	anti-parallel
Strand 3	A	99	101	parallel
Strand 4	A	123	125	parallel
Strand 5	A	147	149	parallel
Strand 6	A	171	173	parallel
Strand 7	A	195	197	parallel
Strand 8	A	219	221	parallel
Strand 9	A	243	245	parallel
Strand 10	A	267	269	parallel
Strand 11	A	291	293	parallel
Strand 12	A	315	317	parallel
Strand 13	A	340	342	parallel
Strand 14	A	364	366	parallel
Strand 15	A	388	390	parallel
Strand 16	A	412	414	parallel
Strand 17	A	436	438	parallel
Strand 18	A	460	462	parallel
Strand 19	A	484	486	parallel
Strand 20	A	508	510	parallel
Strand 21	A	532	534	parallel
Strand 22	A	556	558	parallel
Strand 23	A	579	581	parallel
Strand 24	A	603	605	parallel
Strand 25	A	627	629	parallel
Strand 26	A	651	653	parallel
Strand 27	A	675	677	parallel
Strand 28	A	699	701	parallel
Strand 29	A	723	725	parallel
Strand 30	A	747	749	parallel
Strand 31	A	773	774	parallel
Strand 32	A	796	798	parallel
Strand 33	A	820	822	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	130	131	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	181	first strand
Strand 2	A	202	205	parallel
Strand 3	A	226	227	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	254	first strand
Strand 2	A	274	278	parallel
Strand 3	A	298	301	parallel
Strand 4	A	322	323	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	351	first strand
Strand 2	A	371	373	parallel

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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	419	422	parallel
Strand 3	A	443	446	parallel
Strand 4	A	467	470	parallel
Strand 5	A	491	494	parallel
Strand 6	A	515	518	parallel
Strand 7	A	539	543	parallel
Strand 8	A	563	566	parallel
Strand 9	A	586	590	parallel
Strand 10	A	610	613	parallel
Strand 11	A	634	637	parallel
Strand 12	A	658	661	parallel
Strand 13	A	682	683	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	782	first strand
Strand 2	A	803	806	parallel
Strand 3	A	827	828	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	831	first strand
Strand 2	A	850	851	parallel

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There are 33 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	73	77	anti-parallel
Strand 3	B	99	101	parallel
Strand 4	B	123	125	parallel
Strand 5	B	147	149	parallel
Strand 6	B	171	173	parallel
Strand 7	B	195	197	parallel
Strand 8	B	219	221	parallel
Strand 9	B	243	245	parallel
Strand 10	B	267	269	parallel
Strand 11	B	291	293	parallel
Strand 12	B	315	317	parallel
Strand 13	B	340	342	parallel
Strand 14	B	364	366	parallel
Strand 15	B	388	390	parallel
Strand 16	B	412	414	parallel
Strand 17	B	436	438	parallel
Strand 18	B	460	462	parallel
Strand 19	B	484	486	parallel
Strand 20	B	508	510	parallel
Strand 21	B	532	534	parallel
Strand 22	B	556	558	parallel
Strand 23	B	579	581	parallel
Strand 24	B	603	605	parallel
Strand 25	B	627	629	parallel
Strand 26	B	651	653	parallel
Strand 27	B	675	677	parallel
Strand 28	B	699	701	parallel
Strand 29	B	723	725	parallel
Strand 30	B	747	749	parallel
Strand 31	B	773	774	parallel
Strand 32	B	796	798	parallel
Strand 33	B	820	822	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	178	181	parallel
Strand 3	B	202	205	parallel
Strand 4	B	226	227	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	274	275	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	419	420	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	515	518	parallel
Strand 3	B	539	543	parallel
Strand 4	B	563	565	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	658	661	parallel
Strand 3	B	682	683	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	709	first strand
Strand 2	B	730	733	parallel
Strand 3	B	754	755	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	806	first strand
Strand 2	B	827	828	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	832	first strand
Strand 2	B	850	852	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S6Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6Q