Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S6V entry

There are 4 chains in PDB entry 6S6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 395
B	MET 1	ALA 395
C	MET 1	LYS 1048
D	MET 1	LYS 1048

There are 54 helices in PDB entry 6S6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	38	Right-handed alpha
Helix 2	AA2	A	56	71	Right-handed alpha
Helix 3	AA3	A	86	98	Right-handed alpha
Helix 4	AA4	A	150	173	Right-handed alpha
Helix 5	AA5	A	208	212	Right-handed 310
Helix 6	AA6	A	285	294	Right-handed alpha
Helix 7	AA7	A	295	298	Right-handed 310
Helix 8	AA8	A	319	328	Right-handed alpha
Helix 9	AA9	A	341	348	Right-handed alpha
Helix 10	AB1	A	361	373	Right-handed alpha
Helix 11	AB2	A	378	389	Right-handed alpha
Helix 12	AB3	B	20	38	Right-handed alpha
Helix 13	AB4	B	56	71	Right-handed alpha
Helix 14	AB5	B	86	93	Right-handed alpha
Helix 15	AB6	B	97	100	Right-handed 310
Helix 16	AB7	B	149	173	Right-handed alpha
Helix 17	AB8	B	208	212	Right-handed 310
Helix 18	AB9	B	285	294	Right-handed alpha
Helix 19	AC1	B	295	297	Right-handed 310
Helix 20	AC2	B	314	318	Right-handed 310
Helix 21	AC3	B	319	328	Right-handed alpha
Helix 22	AC4	B	341	347	Right-handed alpha
Helix 23	AC5	B	361	372	Right-handed alpha
Helix 24	AC6	B	378	393	Right-handed alpha
Helix 25	AC7	C	24	31	Right-handed alpha
Helix 26	AC8	C	44	56	Right-handed alpha
Helix 27	AC9	C	101	104	Right-handed 310
Helix 28	AD1	C	128	141	Right-handed alpha
Helix 29	AD2	C	143	151	Right-handed alpha
Helix 30	AD3	C	157	161	Right-handed 310
Helix 31	AD4	C	165	177	Right-handed alpha
Helix 32	AD5	C	180	194	Right-handed alpha
Helix 33	AD6	C	880	887	Right-handed alpha
Helix 34	AD7	C	893	919	Right-handed alpha
Helix 35	AD8	C	947	951	Right-handed 310
Helix 36	AD9	C	952	970	Right-handed alpha
Helix 37	AE1	C	990	1000	Right-handed alpha
Helix 38	AE2	C	1001	1007	Right-handed 310
Helix 39	AE3	C	1019	1024	Right-handed alpha
Helix 40	AE4	C	1042	1046	Right-handed 310
Helix 41	AE5	D	24	29	Right-handed alpha
Helix 42	AE6	D	42	56	Right-handed alpha
Helix 43	AE7	D	128	140	Right-handed alpha
Helix 44	AE8	D	143	151	Right-handed alpha
Helix 45	AE9	D	157	161	Right-handed 310
Helix 46	AF1	D	165	177	Right-handed alpha
Helix 47	AF2	D	180	193	Right-handed alpha
Helix 48	AF3	D	882	887	Right-handed alpha
Helix 49	AF4	D	892	919	Right-handed alpha
Helix 50	AF5	D	947	951	Right-handed 310
Helix 51	AF6	D	952	969	Right-handed alpha
Helix 52	AF7	D	990	1001	Right-handed alpha
Helix 53	AF8	D	1002	1005	Right-handed 310
Helix 54	AF9	D	1019	1024	Right-handed alpha

There are 14 sheets in PDB entry 6S6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	105	first strand
Strand 2	A	77	80	parallel
Strand 3	A	42	45	parallel
Strand 4	A	2	6	parallel
Strand 5	A	254	261	anti-parallel
Strand 6	A	264	272	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	179	182	parallel
Strand 4	A	217	219	parallel
Strand 5	A	235	236	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	308	310	parallel
Strand 3	A	338	339	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	77	79	parallel
Strand 3	B	42	45	parallel
Strand 4	B	2	6	parallel
Strand 5	B	254	261	anti-parallel
Strand 6	B	264	272	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	179	183	parallel
Strand 4	B	217	220	parallel
Strand 5	B	235	236	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	306	311	parallel
Strand 3	B	334	340	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	78	87	anti-parallel
Strand 4	C	90	99	anti-parallel
Strand 5	C	113	114	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	980	982	parallel
Strand 3	C	1011	1014	parallel
Strand 4	C	33	36	parallel
Strand 5	C	1027	1029	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	922	926	first strand
Strand 2	C	934	938	anti-parallel
Strand 3	C	945	946	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1031	1032	first strand
Strand 2	C	1039	1040	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	2	9	anti-parallel
Strand 3	D	78	87	anti-parallel
Strand 4	D	90	99	anti-parallel
Strand 5	D	115	118	anti-parallel
Strand 6	D	124	126	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	980	981	first strand
Strand 2	D	1011	1014	parallel
Strand 3	D	33	36	parallel
Strand 4	D	1027	1029	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	922	926	first strand
Strand 2	D	934	938	anti-parallel
Strand 3	D	944	946	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1031	1032	first strand
Strand 2	D	1039	1040	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6V