Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S6W entry

There are 2 chains in PDB entry 6S6W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	GLY 508
B	LEU 20	GLY 508

There are 37 helices in PDB entry 6S6W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	67	83	Right-handed alpha
Helix 2	AA2	A	92	110	Right-handed alpha
Helix 3	AA3	A	111	123	Right-handed alpha
Helix 4	AA4	A	125	132	Right-handed alpha
Helix 5	AA5	A	132	148	Right-handed alpha
Helix 6	AA6	A	149	151	Right-handed 310
Helix 7	AA7	A	182	196	Right-handed alpha
Helix 8	AA8	A	210	223	Right-handed alpha
Helix 9	AA9	A	240	245	Right-handed alpha
Helix 10	AB1	A	258	272	Right-handed alpha
Helix 11	AB2	A	294	305	Right-handed alpha
Helix 12	AB3	A	324	339	Right-handed alpha
Helix 13	AB4	A	358	375	Right-handed alpha
Helix 14	AB5	A	405	410	Right-handed alpha
Helix 15	AB6	A	424	434	Right-handed alpha
Helix 16	AB7	A	447	458	Right-handed alpha
Helix 17	AB8	A	490	498	Right-handed 310
Helix 18	AB9	B	67	83	Right-handed alpha
Helix 19	AC1	B	86	91	Right-handed alpha
Helix 20	AC2	B	92	101	Right-handed alpha
Helix 21	AC3	B	103	110	Right-handed alpha
Helix 22	AC4	B	110	123	Right-handed alpha
Helix 23	AC5	B	125	132	Right-handed alpha
Helix 24	AC6	B	132	148	Right-handed alpha
Helix 25	AC7	B	149	151	Right-handed 310
Helix 26	AC8	B	182	197	Right-handed alpha
Helix 27	AC9	B	210	223	Right-handed alpha
Helix 28	AD1	B	239	247	Right-handed alpha
Helix 29	AD2	B	258	273	Right-handed alpha
Helix 30	AD3	B	294	308	Right-handed alpha
Helix 31	AD4	B	309	312	Right-handed 310
Helix 32	AD5	B	324	341	Right-handed alpha
Helix 33	AD6	B	358	376	Right-handed alpha
Helix 34	AD7	B	405	410	Right-handed alpha
Helix 35	AD8	B	424	433	Right-handed alpha
Helix 36	AD9	B	447	458	Right-handed alpha
Helix 37	AE1	B	491	496	Right-handed 310

There are 13 sheets in PDB entry 6S6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	39	41	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	59	64	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	162	169	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	B	462	465	parallel
Strand 5	B	440	444	parallel
Strand 6	B	286	289	parallel
Strand 7	B	319	323	parallel
Strand 8	B	416	422	parallel
Strand 9	B	396	401	parallel
Strand 10	B	378	381	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	201	204	parallel
Strand 3	A	174	177	parallel
Strand 4	A	252	256	parallel
Strand 5	A	276	280	parallel
Strand 6	A	484	485	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	422	first strand
Strand 2	A	320	323	parallel
Strand 3	A	287	289	parallel
Strand 4	A	442	444	parallel
Strand 5	A	462	465	parallel
Strand 6	B	498	506	parallel
Strand 7	B	162	170	anti-parallel
Strand 8	B	154	156	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	480	481	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	A	487	488	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	39	41	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	59	64	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	200	204	parallel
Strand 3	B	173	177	parallel
Strand 4	B	252	256	parallel
Strand 5	B	276	280	parallel
Strand 6	B	484	485	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	386	first strand
Strand 2	B	392	393	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	480	481	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	478	first strand
Strand 2	B	487	488	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S6W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6W