Analysis of interatomic Contacts of Structural Units in PDB entry:
6S7O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S7O entry

There are 8 chains in PDB entry 6S7O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 7	THR 705
B	MET 1	PRO 33
C	GLU 2	VAL 79
D	SER 4	GLY 113
E	PRO 29	GLN 594
F	LYS 368	THR 629
G	ALA 42	LYS 452
H	PRO 28	LEU 147

There are 70 helices in PDB entry 6S7O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	35	Right-handed alpha
Helix 2	AA2	A	36	41	Right-handed alpha
Helix 3	AA3	A	49	64	Right-handed alpha
Helix 4	AA4	A	65	70	Right-handed alpha
Helix 5	AA5	A	84	88	Right-handed alpha
Helix 6	AA6	A	90	106	Right-handed alpha
Helix 7	AA7	A	111	118	Right-handed alpha
Helix 8	AA8	A	118	139	Right-handed alpha
Helix 9	AA9	A	140	153	Right-handed alpha
Helix 10	AB1	A	154	160	Right-handed alpha
Helix 11	AB2	A	168	190	Right-handed alpha
Helix 12	AB3	A	191	209	Right-handed alpha
Helix 13	AB4	A	211	216	Right-handed alpha
Helix 14	AB5	A	218	230	Right-handed alpha
Helix 15	AB6	A	233	253	Right-handed alpha
Helix 16	AB7	A	259	264	Right-handed alpha
Helix 17	AB8	A	267	290	Right-handed alpha
Helix 18	AB9	A	291	299	Right-handed alpha
Helix 19	AC1	A	330	335	Right-handed alpha
Helix 20	AC2	A	337	342	Right-handed alpha
Helix 21	AC3	A	349	353	Right-handed 310
Helix 22	AC4	A	356	364	Right-handed alpha
Helix 23	AC5	A	367	369	Right-handed 310
Helix 24	AC6	A	370	381	Right-handed alpha
Helix 25	AC7	A	385	403	Right-handed alpha
Helix 26	AC8	A	404	409	Right-handed 310
Helix 27	AC9	A	410	430	Right-handed alpha
Helix 28	AD1	A	454	482	Right-handed alpha
Helix 29	AD2	A	503	515	Right-handed alpha
Helix 30	AD3	A	529	536	Right-handed alpha
Helix 31	AD4	A	548	561	Right-handed alpha
Helix 32	AD5	A	562	574	Right-handed alpha
Helix 33	AD6	A	595	604	Right-handed alpha
Helix 34	AD7	A	613	617	Right-handed 310
Helix 35	AD8	A	637	642	Right-handed alpha
Helix 36	AD9	B	3	31	Right-handed alpha
Helix 37	AE1	C	14	16	Right-handed 310
Helix 38	AE2	C	17	43	Right-handed alpha
Helix 39	AE3	C	44	48	Right-handed 310
Helix 40	AE4	C	49	76	Right-handed alpha
Helix 41	AE5	D	6	19	Right-handed alpha
Helix 42	AE6	D	21	49	Right-handed alpha
Helix 43	AE7	D	52	78	Right-handed alpha
Helix 44	AE8	D	79	82	Right-handed 310
Helix 45	AE9	D	89	112	Right-handed alpha
Helix 46	AF1	E	262	268	Right-handed alpha
Helix 47	AF2	E	338	340	Right-handed 310
Helix 48	AF3	E	419	421	Right-handed 310
Helix 49	AF4	E	432	435	Right-handed 310
Helix 50	AF5	E	436	457	Right-handed alpha
Helix 51	AF6	E	466	501	Right-handed alpha
Helix 52	AF7	E	508	534	Right-handed alpha
Helix 53	AF8	E	540	565	Right-handed alpha
Helix 54	AF9	E	572	593	Right-handed alpha
Helix 55	AG1	F	538	564	Right-handed alpha
Helix 56	AG2	F	573	596	Right-handed alpha
Helix 57	AG3	F	598	629	Right-handed alpha
Helix 58	AG4	G	55	60	Right-handed alpha
Helix 59	AG5	G	60	70	Right-handed alpha
Helix 60	AG6	G	112	122	Right-handed alpha
Helix 61	AG7	G	135	144	Right-handed alpha
Helix 62	AG8	G	261	264	Right-handed 310
Helix 63	AG9	G	265	270	Right-handed alpha
Helix 64	AH1	G	287	300	Right-handed alpha
Helix 65	AH2	G	422	424	Right-handed 310
Helix 66	AH3	G	425	446	Right-handed alpha
Helix 67	AH4	H	31	46	Right-handed alpha
Helix 68	AH5	H	47	54	Right-handed alpha
Helix 69	AH6	H	83	108	Right-handed alpha
Helix 70	AH7	H	113	143	Right-handed alpha

There are 23 sheets in PDB entry 6S7O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	82	83	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	501	502	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	540	first strand
Strand 2	A	521	523	parallel
Strand 3	A	577	581	parallel
Strand 4	A	689	694	anti-parallel
Strand 5	A	678	683	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	661	first strand
Strand 2	A	666	667	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	E	342	345	anti-parallel
Strand 3	E	348	354	anti-parallel
Strand 4	E	423	429	anti-parallel
Strand 5	E	382	384	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	46	57	anti-parallel
Strand 3	E	126	136	anti-parallel
Strand 4	E	83	88	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	46	57	anti-parallel
Strand 3	E	35	41	anti-parallel
Strand 4	E	170	176	parallel
Strand 5	E	197	199	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	71	first strand
Strand 2	E	113	121	anti-parallel
Strand 3	E	95	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	153	158	anti-parallel
Strand 3	E	214	219	anti-parallel
Strand 4	E	184	185	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	146	first strand
Strand 2	E	256	257	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	336	first strand
Strand 2	E	242	251	anti-parallel
Strand 3	E	226	235	anti-parallel
Strand 4	E	368	373	parallel
Strand 5	E	406	413	anti-parallel
Strand 6	E	390	391	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	336	first strand
Strand 2	E	242	251	anti-parallel
Strand 3	E	226	235	anti-parallel
Strand 4	E	368	373	parallel
Strand 5	E	406	413	anti-parallel
Strand 6	E	395	397	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	284	first strand
Strand 2	E	312	316	anti-parallel
Strand 3	E	303	307	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	364	365	first strand
Strand 2	E	416	417	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	374	376	first strand
Strand 2	F	419	421	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	407	first strand
Strand 2	F	497	502	parallel
Strand 3	F	479	483	anti-parallel
Strand 4	F	435	440	anti-parallel
Strand 5	F	446	450	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	78	first strand
Strand 2	G	46	51	parallel
Strand 3	G	96	100	parallel
Strand 4	G	125	130	parallel
Strand 5	G	254	259	parallel
Strand 6	G	244	248	anti-parallel
Strand 7	G	212	213	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	148	first strand
Strand 2	G	203	204	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	195	197	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	307	308	first strand
Strand 2	G	337	338	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	315	first strand
Strand 2	G	330	334	anti-parallel
Strand 3	G	377	380	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	326	first strand
Strand 2	G	402	411	parallel
Strand 3	G	386	394	anti-parallel
Strand 4	G	354	358	anti-parallel
Strand 5	G	362	367	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	370	371	first strand
Strand 2	G	374	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S7O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S7O