Analysis of interatomic Contacts of Structural Units in PDB entry:
6S84

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S84 entry

There are 6 chains in PDB entry 6S84 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 327
E	GLN -1	ASN 160
D	MET 1	VAL 327
C	MET 1	ARG 205
F	MET 1	GLU 201
B	GLN -1	GLU 157

There are 54 helices in PDB entry 6S84. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	66	Right-handed alpha
Helix 2	AA2	A	67	71	Right-handed 310
Helix 3	AA3	A	82	101	Right-handed alpha
Helix 4	AA4	A	108	121	Right-handed alpha
Helix 5	AA5	A	159	172	Right-handed alpha
Helix 6	AA6	A	176	186	Right-handed alpha
Helix 7	AA7	A	209	223	Right-handed alpha
Helix 8	AA8	A	227	254	Right-handed alpha
Helix 9	AA9	A	264	267	Right-handed 310
Helix 10	AB1	A	268	282	Right-handed alpha
Helix 11	AB2	A	297	311	Right-handed alpha
Helix 12	AB3	E	10	23	Right-handed alpha
Helix 13	AB4	E	40	49	Right-handed alpha
Helix 14	AB5	E	50	53	Right-handed 310
Helix 15	AB6	E	55	59	Right-handed 310
Helix 16	AB7	E	87	92	Right-handed alpha
Helix 17	AB8	E	92	98	Right-handed alpha
Helix 18	AB9	E	110	113	Right-handed 310
Helix 19	AC1	E	143	157	Right-handed alpha
Helix 20	AC2	D	50	66	Right-handed alpha
Helix 21	AC3	D	67	71	Right-handed 310
Helix 22	AC4	D	82	101	Right-handed alpha
Helix 23	AC5	D	108	121	Right-handed alpha
Helix 24	AC6	D	159	171	Right-handed alpha
Helix 25	AC7	D	176	186	Right-handed alpha
Helix 26	AC8	D	209	222	Right-handed alpha
Helix 27	AC9	D	227	254	Right-handed alpha
Helix 28	AD1	D	263	267	Right-handed 310
Helix 29	AD2	D	268	282	Right-handed alpha
Helix 30	AD3	D	296	311	Right-handed alpha
Helix 31	AD4	C	32	48	Right-handed alpha
Helix 32	AD5	C	51	55	Right-handed 310
Helix 33	AD6	C	66	82	Right-handed alpha
Helix 34	AD7	C	92	101	Right-handed alpha
Helix 35	AD8	C	140	151	Right-handed alpha
Helix 36	AD9	C	163	177	Right-handed alpha
Helix 37	AE1	C	190	192	Right-handed 310
Helix 38	AE2	C	193	205	Right-handed alpha
Helix 39	AE3	F	36	48	Right-handed alpha
Helix 40	AE4	F	51	55	Right-handed 310
Helix 41	AE5	F	66	82	Right-handed alpha
Helix 42	AE6	F	92	100	Right-handed alpha
Helix 43	AE7	F	140	151	Right-handed alpha
Helix 44	AE8	F	163	177	Right-handed alpha
Helix 45	AE9	F	182	186	Right-handed 310
Helix 46	AF1	F	193	201	Right-handed alpha
Helix 47	AF2	B	10	24	Right-handed alpha
Helix 48	AF3	B	41	50	Right-handed alpha
Helix 49	AF4	B	51	53	Right-handed 310
Helix 50	AF5	B	55	59	Right-handed 310
Helix 51	AF6	B	82	84	Right-handed 310
Helix 52	AF7	B	87	92	Right-handed alpha
Helix 53	AF8	B	92	98	Right-handed alpha
Helix 54	AF9	B	143	155	Right-handed alpha

There are 9 sheets in PDB entry 6S84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	29	first strand
Strand 2	A	14	19	anti-parallel
Strand 3	A	2	7	anti-parallel
Strand 4	A	73	77	parallel
Strand 5	A	104	107	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	138	143	anti-parallel
Strand 3	A	128	133	anti-parallel
Strand 4	A	258	262	parallel
Strand 5	A	285	287	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	9	first strand
Strand 2	E	134	140	anti-parallel
Strand 3	E	122	127	anti-parallel
Strand 4	E	30	34	parallel
Strand 5	E	104	108	parallel
Strand 6	E	75	80	parallel
Strand 7	E	67	71	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	29	first strand
Strand 2	D	14	18	anti-parallel
Strand 3	D	3	7	anti-parallel
Strand 4	D	73	77	parallel
Strand 5	D	104	107	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	137	143	anti-parallel
Strand 3	D	128	134	anti-parallel
Strand 4	D	258	262	parallel
Strand 5	D	285	287	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	57	61	parallel
Strand 3	C	2	7	parallel
Strand 4	C	12	18	anti-parallel
Strand 5	C	21	28	anti-parallel
Strand 6	F	21	28	anti-parallel
Strand 7	F	12	18	anti-parallel
Strand 8	F	2	7	anti-parallel
Strand 9	F	57	61	parallel
Strand 10	F	88	91	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	139	first strand
Strand 2	C	117	124	anti-parallel
Strand 3	C	106	112	anti-parallel
Strand 4	C	154	157	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	139	first strand
Strand 2	F	117	125	anti-parallel
Strand 3	F	106	112	anti-parallel
Strand 4	F	154	157	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	9	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	122	128	anti-parallel
Strand 4	B	30	35	parallel
Strand 5	B	104	108	parallel
Strand 6	B	75	80	parallel
Strand 7	B	67	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S84

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S84