Analysis of interatomic Contacts of Structural Units in PDB entry:
6S85

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S85 entry

There are 4 chains in PDB entry 6S85 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	VAL 1047
D	MET 1	VAL 1047
A	MET 1	ALA 395
B	MET 1	GLN 162

There are 50 helices in PDB entry 6S85. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	48	56	Right-handed alpha
Helix 2	AA2	C	101	104	Right-handed 310
Helix 3	AA3	C	128	141	Right-handed alpha
Helix 4	AA4	C	143	151	Right-handed alpha
Helix 5	AA5	C	165	177	Right-handed alpha
Helix 6	AA6	C	180	200	Right-handed alpha
Helix 7	AA7	C	876	881	Right-handed alpha
Helix 8	AA8	C	881	887	Right-handed alpha
Helix 9	AA9	C	893	917	Right-handed alpha
Helix 10	AB1	C	952	969	Right-handed alpha
Helix 11	AB2	C	992	1005	Right-handed alpha
Helix 12	AB3	C	1017	1024	Right-handed alpha
Helix 13	AB4	D	24	29	Right-handed alpha
Helix 14	AB5	D	42	56	Right-handed alpha
Helix 15	AB6	D	128	141	Right-handed alpha
Helix 16	AB7	D	143	151	Right-handed alpha
Helix 17	AB8	D	158	163	Right-handed alpha
Helix 18	AB9	D	166	177	Right-handed alpha
Helix 19	AC1	D	181	199	Right-handed alpha
Helix 20	AC2	D	875	885	Right-handed alpha
Helix 21	AC3	D	892	919	Right-handed alpha
Helix 22	AC4	D	947	951	Right-handed 310
Helix 23	AC5	D	952	971	Right-handed alpha
Helix 24	AC6	D	985	989	Right-handed 310
Helix 25	AC7	D	993	1007	Right-handed alpha
Helix 26	AC8	D	1017	1021	Right-handed 310
Helix 27	AC9	A	20	39	Right-handed alpha
Helix 28	AD1	A	57	71	Right-handed alpha
Helix 29	AD2	A	86	91	Right-handed alpha
Helix 30	AD3	A	92	94	Right-handed 310
Helix 31	AD4	A	95	100	Right-handed 310
Helix 32	AD5	A	133	137	Right-handed 310
Helix 33	AD6	A	145	173	Right-handed alpha
Helix 34	AD7	A	208	212	Right-handed 310
Helix 35	AD8	A	285	293	Right-handed alpha
Helix 36	AD9	A	294	297	Right-handed 310
Helix 37	AE1	A	319	328	Right-handed alpha
Helix 38	AE2	A	350	354	Right-handed 310
Helix 39	AE3	A	361	371	Right-handed alpha
Helix 40	AE4	A	377	393	Right-handed alpha
Helix 41	AE5	B	20	39	Right-handed alpha
Helix 42	AE6	B	58	72	Right-handed alpha
Helix 43	AE7	B	96	100	Right-handed 310
Helix 44	AE8	B	152	173	Right-handed alpha
Helix 45	AE9	B	208	212	Right-handed 310
Helix 46	AF1	B	285	294	Right-handed alpha
Helix 47	AF2	B	295	297	Right-handed 310
Helix 48	AF3	B	316	331	Right-handed alpha
Helix 49	AF4	B	361	369	Right-handed alpha
Helix 50	AF5	B	377	394	Right-handed alpha

There are 16 sheets in PDB entry 6S85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	2	9	anti-parallel
Strand 3	C	78	86	anti-parallel
Strand 4	C	96	99	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	979	982	first strand
Strand 2	C	1010	1013	parallel
Strand 3	C	33	34	parallel
Strand 4	C	1026	1027	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	922	926	first strand
Strand 2	C	934	938	anti-parallel
Strand 3	C	944	947	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	21	first strand
Strand 2	D	3	9	anti-parallel
Strand 3	D	78	87	anti-parallel
Strand 4	D	90	99	anti-parallel
Strand 5	D	114	117	anti-parallel
Strand 6	D	124	126	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	35	first strand
Strand 2	D	1011	1014	parallel
Strand 3	D	980	982	parallel
Strand 4	D	152	153	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	922	926	first strand
Strand 2	D	934	938	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1030	1032	first strand
Strand 2	D	1039	1041	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	105	first strand
Strand 2	A	76	80	parallel
Strand 3	A	42	46	parallel
Strand 4	A	3	6	parallel
Strand 5	A	254	261	anti-parallel
Strand 6	A	264	272	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	116	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	179	181	parallel
Strand 4	A	217	219	parallel
Strand 5	A	232	237	parallel
Strand 6	A	227	229	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	305	311	parallel
Strand 3	A	333	340	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	42	45	parallel
Strand 3	B	76	79	parallel
Strand 4	B	102	104	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	116	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	179	181	parallel
Strand 4	B	217	218	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	237	238	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	261	first strand
Strand 2	B	264	272	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	305	307	parallel
Strand 3	B	333	334	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	310	first strand
Strand 2	B	338	339	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S85

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S85