Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S8C entry

There are 3 chains in PDB entry 6S8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	GLN 404
B	ARG 2	GLY 405
C	SER 1	PHE 403

There are 20 helices in PDB entry 6S8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	9	Right-handed 310
Helix 2	AA2	A	133	137	Right-handed 310
Helix 3	AA3	A	177	179	Right-handed 310
Helix 4	AA4	A	193	195	Right-handed 310
Helix 5	AA5	A	217	222	Right-handed alpha
Helix 6	AA6	A	237	241	Right-handed 310
Helix 7	AA7	A	260	268	Right-handed alpha
Helix 8	AA8	B	7	9	Right-handed 310
Helix 9	AA9	B	133	137	Right-handed 310
Helix 10	AB1	B	177	179	Right-handed 310
Helix 11	AB2	B	193	195	Right-handed 310
Helix 12	AB3	B	217	222	Right-handed alpha
Helix 13	AB4	B	237	240	Right-handed 310
Helix 14	AB5	B	260	268	Right-handed alpha
Helix 15	AB6	C	7	9	Right-handed 310
Helix 16	AB7	C	133	137	Right-handed 310
Helix 17	AB8	C	193	195	Right-handed 310
Helix 18	AB9	C	217	222	Right-handed alpha
Helix 19	AC1	C	237	240	Right-handed 310
Helix 20	AC2	C	260	268	Right-handed alpha

There are 25 sheets in PDB entry 6S8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	30	33	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	138	145	anti-parallel
Strand 5	A	161	165	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	30	33	parallel
Strand 3	A	41	51	anti-parallel
Strand 4	A	280	282	anti-parallel
Strand 5	A	276	277	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	286	295	anti-parallel
Strand 4	A	181	190	anti-parallel
Strand 5	A	171	175	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	126	131	anti-parallel
Strand 4	A	54	60	anti-parallel
Strand 5	A	227	228	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	371	375	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	363	364	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	346	first strand
Strand 2	A	379	385	anti-parallel
Strand 3	A	388	394	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	30	33	parallel
Strand 3	B	41	51	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	30	33	parallel
Strand 3	B	41	51	anti-parallel
Strand 4	B	280	282	anti-parallel
Strand 5	B	275	277	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	286	295	anti-parallel
Strand 4	B	181	190	anti-parallel
Strand 5	B	171	175	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	216	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	126	131	anti-parallel
Strand 4	B	54	60	anti-parallel
Strand 5	B	227	229	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	65	first strand
Strand 2	B	117	121	anti-parallel
Strand 3	B	90	91	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	247	first strand
Strand 2	B	252	256	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	363	364	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	385	anti-parallel
Strand 3	B	388	394	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	30	33	parallel
Strand 3	C	41	51	anti-parallel
Strand 4	C	138	145	anti-parallel
Strand 5	C	161	165	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	30	33	parallel
Strand 3	C	41	51	anti-parallel
Strand 4	C	280	282	anti-parallel
Strand 5	C	275	277	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	18	26	anti-parallel
Strand 3	C	286	295	anti-parallel
Strand 4	C	181	190	anti-parallel
Strand 5	C	171	175	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	216	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	126	131	anti-parallel
Strand 4	C	54	60	anti-parallel
Strand 5	C	227	228	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	65	first strand
Strand 2	C	116	121	anti-parallel
Strand 3	C	90	92	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	255	256	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	326	332	anti-parallel
Strand 3	C	371	375	anti-parallel
Strand 4	C	356	357	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	363	365	anti-parallel
Strand 3	C	368	369	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	342	346	first strand
Strand 2	C	379	385	anti-parallel
Strand 3	C	388	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8C