Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S8F entry

There are 2 chains in PDB entry 6S8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 UNK 8TYR 2787
H
 UNK 8TYR 2787
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are286 helices in PDB entry 6S8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
9 18Right-handed alpha
Helix 2
AA2
F
25 35Right-handed alpha
Helix 3
AA3
F
44 70Right-handed alpha
Helix 4
AA4
F
76 97Right-handed alpha
Helix 5
AA5
F
104 117Right-handed alpha
Helix 6
AA6
F
131 140Right-handed alpha
Helix 7
AA7
F
142 147Right-handed alpha
Helix 8
AA8
F
152 172Right-handed alpha
Helix 9
AA9
F
176 193Right-handed alpha
Helix 10
AB1
F
210 226Right-handed alpha
Helix 11
AB2
F
230 234Right-handed 310
Helix 12
AB3
F
240 250Right-handed alpha
Helix 13
AB4
F
256 265Right-handed alpha
Helix 14
AB5
F
280 293Right-handed alpha
Helix 15
AB6
F
294 304Right-handed alpha
Helix 16
AB7
F
310 319Right-handed alpha
Helix 17
AB8
F
322 332Right-handed alpha
Helix 18
AB9
F
334 345Right-handed alpha
Helix 19
AC1
F
352 377Right-handed alpha
Helix 20
AC2
F
424 431Right-handed alpha
Helix 21
AC3
F
446 460Right-handed alpha
Helix 22
AC4
F
473 489Right-handed alpha
Helix 23
AC5
F
511 513Right-handed 310
Helix 24
AC6
F
514 532Right-handed alpha
Helix 25
AC7
F
560 568Right-handed alpha
Helix 26
AC8
F
569 573Right-handed 310
Helix 27
AC9
F
580 590Right-handed alpha
Helix 28
AD1
F
603 608Right-handed alpha
Helix 29
AD2
F
612 621Right-handed alpha
Helix 30
AD3
F
627 639Right-handed alpha
Helix 31
AD4
F
647 657Right-handed alpha
Helix 32
AD5
F
666 678Right-handed alpha
Helix 33
AD6
F
682 686Right-handed alpha
Helix 34
AD7
F
686 695Right-handed alpha
Helix 35
AD8
F
712 719Right-handed alpha
Helix 36
AD9
F
747 760Right-handed alpha
Helix 37
AE1
F
772 789Right-handed alpha
Helix 38
AE2
F
798 809Right-handed alpha
Helix 39
AE3
F
821 834Right-handed alpha
Helix 40
AE4
F
839 850Right-handed alpha
Helix 41
AE5
F
861 867Right-handed alpha
Helix 42
AE6
F
883 899Right-handed alpha
Helix 43
AE7
F
903 918Right-handed alpha
Helix 44
AE8
F
920 925Right-handed alpha
Helix 45
AE9
F
926 943Right-handed alpha
Helix 46
AF1
F
948 964Right-handed alpha
Helix 47
AF2
F
971 979Right-handed alpha
Helix 48
AF3
F
982 990Right-handed alpha
Helix 49
AF4
F
993 1001Right-handed alpha
Helix 50
AF5
F
1002 1016Right-handed alpha
Helix 51
AF6
F
1024 1033Right-handed alpha
Helix 52
AF7
F
1037 1047Right-handed alpha
Helix 53
AF8
F
1056 1072Right-handed alpha
Helix 54
AF9
F
1085 1090Right-handed alpha
Helix 55
AG1
F
1133 1141Right-handed alpha
Helix 56
AG2
F
1152 1160Right-handed alpha
Helix 57
AG3
F
1164 1171Right-handed alpha
Helix 58
AG4
F
1171 1179Right-handed alpha
Helix 59
AG5
F
1200 1208Right-handed alpha
Helix 60
AG6
F
1208 1219Right-handed alpha
Helix 61
AG7
F
1226 1236Right-handed alpha
Helix 62
AG8
F
1244 1251Right-handed alpha
Helix 63
AG9
F
1267 1275Right-handed alpha
Helix 64
AH1
F
1280 1298Right-handed alpha
Helix 65
AH2
F
1300 1318Right-handed alpha
Helix 66
AH3
F
1324 1334Right-handed alpha
Helix 67
AH4
F
1335 1342Right-handed 310
Helix 68
AH5
F
1344 1362Right-handed alpha
Helix 69
AH6
F
1366 1368Right-handed 310
Helix 70
AH7
F
1369 1383Right-handed alpha
Helix 71
AH8
F
1388 1398Right-handed alpha
Helix 72
AH9
F
1405 1417Right-handed alpha
Helix 73
AI1
F
1422 1428Right-handed 310
Helix 74
AI2
F
1438 1450Right-handed alpha
Helix 75
AI3
F
1456 1461Right-handed alpha
Helix 76
AI4
F
1484 1506Right-handed alpha
Helix 77
AI5
F
1513 1524Right-handed alpha
Helix 78
AI6
F
1529 1541Right-handed alpha
Helix 79
AI7
F
1542 1548Right-handed 310
Helix 80
AI8
F
1550 1565Right-handed alpha
Helix 81
AI9
F
1576 1581Right-handed alpha
Helix 82
AJ1
F
1589 1597Right-handed alpha
Helix 83
AJ2
F
1611 1615Right-handed 310
Helix 84
AJ3
F
1622 1639Right-handed alpha
Helix 85
AJ4
F
1643 1647Right-handed 310
Helix 86
AJ5
F
1648 1654Right-handed alpha
Helix 87
AJ6
F
1657 1673Right-handed alpha
Helix 88
AJ7
F
1674 1687Right-handed alpha
Helix 89
AJ8
F
1688 1689Right-handed 310
Helix 90
AJ9
F
1690 1694Right-handed 310
Helix 91
AK1
F
1697 1718Right-handed alpha
Helix 92
AK2
F
1720 1728Right-handed alpha
Helix 93
AK3
F
1731 1742Right-handed alpha
Helix 94
AK4
F
1745 1756Right-handed alpha
Helix 95
AK5
F
1759 1763Right-handed 310
Helix 96
AK6
F
1764 1774Right-handed alpha
Helix 97
AK7
F
1780 1784Right-handed 310
Helix 98
AK8
F
1789 1800Right-handed alpha
Helix 99
AK9
F
1803 1818Right-handed alpha
Helix 100
AL1
F
1819 1822Right-handed 310
Helix 101
AL2
F
1826 1838Right-handed alpha
Helix 102
AL3
F
1839 1847Right-handed alpha
Helix 103
AL4
F
1855 1864Right-handed alpha
Helix 104
AL5
F
1877 1887Right-handed alpha
Helix 105
AL6
F
1894 1909Right-handed alpha
Helix 106
AL7
F
1915 1934Right-handed alpha
Helix 107
AL8
F
1941 1958Right-handed alpha
Helix 108
AL9
F
1961 1984Right-handed alpha
Helix 109
AM1
F
1987 2012Right-handed alpha
Helix 110
AM2
F
2014 2032Right-handed alpha
Helix 111
AM3
F
2038 2060Right-handed alpha
Helix 112
AM4
F
2064 2080Right-handed alpha
Helix 113
AM5
F
2081 2085Right-handed 310
Helix 114
AM6
F
2107 2112Right-handed alpha
Helix 115
AM7
F
2116 2124Right-handed alpha
Helix 116
AM8
F
2137 2159Right-handed alpha
Helix 117
AM9
F
2161 2180Right-handed alpha
Helix 118
AN1
F
2200 2237Right-handed alpha
Helix 119
AN2
F
2244 2257Right-handed alpha
Helix 120
AN3
F
2260 2266Right-handed alpha
Helix 121
AN4
F
2266 2271Right-handed alpha
Helix 122
AN5
F
2275 2280Right-handed 310
Helix 123
AN6
F
2298 2312Right-handed alpha
Helix 124
AN7
F
2316 2325Right-handed alpha
Helix 125
AN8
F
2333 2352Right-handed alpha
Helix 126
AN9
F
2357 2362Right-handed alpha
Helix 127
AO1
F
2362 2377Right-handed alpha
Helix 128
AO2
F
2397 2402Right-handed alpha
Helix 129
AO3
F
2472 2489Right-handed alpha
Helix 130
AO4
F
2491 2496Right-handed alpha
Helix 131
AO5
F
2525 2533Right-handed alpha
Helix 132
AO6
F
2539 2550Right-handed alpha
Helix 133
AO7
F
2554 2569Right-handed alpha
Helix 134
AO8
F
2574 2581Right-handed alpha
Helix 135
AO9
F
2583 2608Right-handed alpha
Helix 136
AP1
F
2637 2641Right-handed 310
Helix 137
AP2
F
2653 2658Right-handed alpha
Helix 138
AP3
F
2668 2683Right-handed alpha
Helix 139
AP4
F
2684 2692Right-handed alpha
Helix 140
AP5
F
2707 2717Right-handed alpha
Helix 141
AP6
F
2736 2754Right-handed alpha
Helix 142
AP7
F
2758 2771Right-handed alpha
Helix 143
AP8
F
2772 2777Right-handed alpha
Helix 144
AP9
H
9 18Right-handed alpha
Helix 145
AQ1
H
25 35Right-handed alpha
Helix 146
AQ2
H
44 70Right-handed alpha
Helix 147
AQ3
H
76 97Right-handed alpha
Helix 148
AQ4
H
104 117Right-handed alpha
Helix 149
AQ5
H
131 140Right-handed alpha
Helix 150
AQ6
H
142 147Right-handed alpha
Helix 151
AQ7
H
152 172Right-handed alpha
Helix 152
AQ8
H
174 193Right-handed alpha
Helix 153
AQ9
H
210 226Right-handed alpha
Helix 154
AR1
H
230 234Right-handed 310
Helix 155
AR2
H
240 250Right-handed alpha
Helix 156
AR3
H
256 265Right-handed alpha
Helix 157
AR4
H
280 293Right-handed alpha
Helix 158
AR5
H
294 304Right-handed alpha
Helix 159
AR6
H
310 319Right-handed alpha
Helix 160
AR7
H
322 332Right-handed alpha
Helix 161
AR8
H
334 345Right-handed alpha
Helix 162
AR9
H
352 377Right-handed alpha
Helix 163
AS1
H
424 431Right-handed alpha
Helix 164
AS2
H
446 460Right-handed alpha
Helix 165
AS3
H
473 489Right-handed alpha
Helix 166
AS4
H
511 513Right-handed 310
Helix 167
AS5
H
514 532Right-handed alpha
Helix 168
AS6
H
560 568Right-handed alpha
Helix 169
AS7
H
569 573Right-handed 310
Helix 170
AS8
H
580 590Right-handed alpha
Helix 171
AS9
H
603 608Right-handed alpha
Helix 172
AT1
H
612 621Right-handed alpha
Helix 173
AT2
H
627 639Right-handed alpha
Helix 174
AT3
H
647 657Right-handed alpha
Helix 175
AT4
H
666 678Right-handed alpha
Helix 176
AT5
H
682 686Right-handed alpha
Helix 177
AT6
H
686 695Right-handed alpha
Helix 178
AT7
H
712 719Right-handed alpha
Helix 179
AT8
H
747 760Right-handed alpha
Helix 180
AT9
H
772 789Right-handed alpha
Helix 181
AU1
H
798 809Right-handed alpha
Helix 182
AU2
H
821 834Right-handed alpha
Helix 183
AU3
H
839 850Right-handed alpha
Helix 184
AU4
H
861 867Right-handed alpha
Helix 185
AU5
H
883 899Right-handed alpha
Helix 186
AU6
H
903 918Right-handed alpha
Helix 187
AU7
H
920 925Right-handed alpha
Helix 188
AU8
H
926 943Right-handed alpha
Helix 189
AU9
H
948 964Right-handed alpha
Helix 190
AV1
H
971 979Right-handed alpha
Helix 191
AV2
H
982 990Right-handed alpha
Helix 192
AV3
H
993 1001Right-handed alpha
Helix 193
AV4
H
1002 1016Right-handed alpha
Helix 194
AV5
H
1024 1033Right-handed alpha
Helix 195
AV6
H
1037 1047Right-handed alpha
Helix 196
AV7
H
1056 1072Right-handed alpha
Helix 197
AV8
H
1085 1090Right-handed alpha
Helix 198
AV9
H
1133 1141Right-handed alpha
Helix 199
AW1
H
1152 1160Right-handed alpha
Helix 200
AW2
H
1164 1171Right-handed alpha
Helix 201
AW3
H
1171 1179Right-handed alpha
Helix 202
AW4
H
1200 1208Right-handed alpha
Helix 203
AW5
H
1208 1219Right-handed alpha
Helix 204
AW6
H
1226 1236Right-handed alpha
Helix 205
AW7
H
1244 1251Right-handed alpha
Helix 206
AW8
H
1267 1275Right-handed alpha
Helix 207
AW9
H
1280 1298Right-handed alpha
Helix 208
AX1
H
1300 1318Right-handed alpha
Helix 209
AX2
H
1324 1334Right-handed alpha
Helix 210
AX3
H
1335 1342Right-handed 310
Helix 211
AX4
H
1344 1362Right-handed alpha
Helix 212
AX5
H
1366 1368Right-handed 310
Helix 213
AX6
H
1369 1383Right-handed alpha
Helix 214
AX7
H
1388 1398Right-handed alpha
Helix 215
AX8
H
1405 1417Right-handed alpha
Helix 216
AX9
H
1422 1428Right-handed 310
Helix 217
AY1
H
1438 1450Right-handed alpha
Helix 218
AY2
H
1456 1461Right-handed alpha
Helix 219
AY3
H
1484 1506Right-handed alpha
Helix 220
AY4
H
1513 1524Right-handed alpha
Helix 221
AY5
H
1529 1541Right-handed alpha
Helix 222
AY6
H
1542 1548Right-handed 310
Helix 223
AY7
H
1550 1565Right-handed alpha
Helix 224
AY8
H
1576 1581Right-handed alpha
Helix 225
AY9
H
1589 1597Right-handed alpha
Helix 226
AZ1
H
1611 1615Right-handed 310
Helix 227
AZ2
H
1622 1639Right-handed alpha
Helix 228
AZ3
H
1643 1647Right-handed 310
Helix 229
AZ4
H
1648 1654Right-handed alpha
Helix 230
AZ5
H
1657 1673Right-handed alpha
Helix 231
AZ6
H
1674 1687Right-handed alpha
Helix 232
AZ7
H
1688 1689Right-handed 310
Helix 233
AZ8
H
1690 1694Right-handed 310
Helix 234
AZ9
H
1697 1718Right-handed alpha
Helix 235
BA1
H
1720 1728Right-handed alpha
Helix 236
BA2
H
1731 1742Right-handed alpha
Helix 237
BA3
H
1745 1756Right-handed alpha
Helix 238
BA4
H
1759 1763Right-handed 310
Helix 239
BA5
H
1764 1774Right-handed alpha
Helix 240
BA6
H
1780 1784Right-handed 310
Helix 241
BA7
H
1789 1800Right-handed alpha
Helix 242
BA8
H
1803 1818Right-handed alpha
Helix 243
BA9
H
1819 1822Right-handed 310
Helix 244
BB1
H
1826 1838Right-handed alpha
Helix 245
BB2
H
1839 1845Right-handed alpha
Helix 246
BB3
H
1855 1864Right-handed alpha
Helix 247
BB4
H
1877 1887Right-handed alpha
Helix 248
BB5
H
1894 1909Right-handed alpha
Helix 249
BB6
H
1915 1934Right-handed alpha
Helix 250
BB7
H
1941 1958Right-handed alpha
Helix 251
BB8
H
1961 1984Right-handed alpha
Helix 252
BB9
H
1987 2012Right-handed alpha
Helix 253
BC1
H
2014 2032Right-handed alpha
Helix 254
BC2
H
2038 2060Right-handed alpha
Helix 255
BC3
H
2064 2080Right-handed alpha
Helix 256
BC4
H
2081 2085Right-handed 310
Helix 257
BC5
H
2107 2112Right-handed alpha
Helix 258
BC6
H
2116 2124Right-handed alpha
Helix 259
BC7
H
2137 2159Right-handed alpha
Helix 260
BC8
H
2161 2180Right-handed alpha
Helix 261
BC9
H
2200 2237Right-handed alpha
Helix 262
BD1
H
2244 2257Right-handed alpha
Helix 263
BD2
H
2260 2266Right-handed alpha
Helix 264
BD3
H
2266 2271Right-handed alpha
Helix 265
BD4
H
2275 2280Right-handed 310
Helix 266
BD5
H
2298 2312Right-handed alpha
Helix 267
BD6
H
2316 2325Right-handed alpha
Helix 268
BD7
H
2333 2352Right-handed alpha
Helix 269
BD8
H
2357 2362Right-handed alpha
Helix 270
BD9
H
2362 2377Right-handed alpha
Helix 271
BE1
H
2397 2402Right-handed alpha
Helix 272
BE2
H
2472 2489Right-handed alpha
Helix 273
BE3
H
2491 2496Right-handed alpha
Helix 274
BE4
H
2525 2533Right-handed alpha
Helix 275
BE5
H
2539 2550Right-handed alpha
Helix 276
BE6
H
2554 2569Right-handed alpha
Helix 277
BE7
H
2574 2581Right-handed alpha
Helix 278
BE8
H
2583 2608Right-handed alpha
Helix 279
BE9
H
2637 2641Right-handed 310
Helix 280
BF1
H
2653 2658Right-handed alpha
Helix 281
BF2
H
2668 2683Right-handed alpha
Helix 282
BF3
H
2684 2692Right-handed alpha
Helix 283
BF4
H
2707 2717Right-handed alpha
Helix 284
BF5
H
2736 2754Right-handed alpha
Helix 285
BF6
H
2758 2771Right-handed alpha
Helix 286
BF7
H
2772 2777Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6S8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2387 2389first strand
Strand 2
F
2436 2439anti-parallel
Strand 3
F
2448 2453anti-parallel
Strand 4
F
2459 2461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
2618 2619first strand
Strand 2
F
2628 2629anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2387 2389first strand
Strand 2
H
2436 2439anti-parallel
Strand 3
H
2448 2453anti-parallel
Strand 4
H
2459 2461anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
2618 2619first strand
Strand 2
H
2628 2629anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il