Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S8G entry

There are 4 chains in PDB entry 6S8G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	PHE 239
B	ALA 2	ARG 240
F	ILE 2	PHE 352
G	MET 1	ARG 358

There are 46 helices in PDB entry 6S8G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	51	Right-handed alpha
Helix 2	AA2	A	71	79	Right-handed alpha
Helix 3	AA3	A	94	101	Right-handed alpha
Helix 4	AA4	A	114	122	Right-handed alpha
Helix 5	AA5	A	127	131	Right-handed 310
Helix 6	AA6	A	140	152	Right-handed alpha
Helix 7	AA7	A	153	155	Right-handed 310
Helix 8	AA8	A	170	180	Right-handed alpha
Helix 9	AA9	A	220	225	Right-handed alpha
Helix 10	AB1	A	227	234	Right-handed alpha
Helix 11	AB2	B	43	51	Right-handed alpha
Helix 12	AB3	B	71	79	Right-handed alpha
Helix 13	AB4	B	94	101	Right-handed alpha
Helix 14	AB5	B	114	122	Right-handed alpha
Helix 15	AB6	B	127	131	Right-handed 310
Helix 16	AB7	B	140	152	Right-handed alpha
Helix 17	AB8	B	153	155	Right-handed 310
Helix 18	AB9	B	170	180	Right-handed alpha
Helix 19	AC1	B	220	225	Right-handed alpha
Helix 20	AC2	B	227	234	Right-handed alpha
Helix 21	AC3	F	3	33	Right-handed alpha
Helix 22	AC4	F	34	38	Right-handed 310
Helix 23	AC5	F	47	55	Right-handed alpha
Helix 24	AC6	F	55	60	Right-handed alpha
Helix 25	AC7	F	62	82	Right-handed alpha
Helix 26	AC8	F	85	90	Right-handed alpha
Helix 27	AC9	F	104	119	Right-handed alpha
Helix 28	AD1	F	120	126	Right-handed alpha
Helix 29	AD2	F	273	282	Right-handed alpha
Helix 30	AD3	F	298	311	Right-handed alpha
Helix 31	AD4	F	329	334	Right-handed alpha
Helix 32	AD5	F	336	345	Right-handed alpha
Helix 33	AD6	G	6	15	Right-handed alpha
Helix 34	AD7	G	15	41	Right-handed alpha
Helix 35	AD8	G	53	58	Right-handed alpha
Helix 36	AD9	G	61	66	Right-handed alpha
Helix 37	AE1	G	67	86	Right-handed alpha
Helix 38	AE2	G	89	94	Right-handed alpha
Helix 39	AE3	G	98	121	Right-handed alpha
Helix 40	AE4	G	124	133	Right-handed alpha
Helix 41	AE5	G	251	258	Right-handed 310
Helix 42	AE6	G	281	293	Right-handed alpha
Helix 43	AE7	G	308	316	Right-handed alpha
Helix 44	AE8	G	317	322	Right-handed alpha
Helix 45	AE9	G	336	341	Right-handed alpha
Helix 46	AF1	G	342	356	Right-handed alpha

There are 6 sheets in PDB entry 6S8G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	26	first strand
Strand 2	A	4	11	anti-parallel
Strand 3	A	59	62	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	32	35	parallel
Strand 3	A	206	210	parallel
Strand 4	A	215	219	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	157	161	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	26	first strand
Strand 2	B	4	11	anti-parallel
Strand 3	B	59	62	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	32	35	parallel
Strand 3	B	206	210	parallel
Strand 4	B	215	219	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	157	161	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S8G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8G