Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S8H entry

There are 4 chains in PDB entry 6S8H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 240
B	ALA 2	PHE 239
F	ILE 2	VAL 353
G	PRO 3	SER 360

There are 44 helices in PDB entry 6S8H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	51	Right-handed alpha
Helix 2	AA2	A	71	76	Right-handed alpha
Helix 3	AA3	A	94	102	Right-handed alpha
Helix 4	AA4	A	114	125	Right-handed alpha
Helix 5	AA5	A	144	152	Right-handed alpha
Helix 6	AA6	A	177	186	Right-handed alpha
Helix 7	AA7	A	220	224	Right-handed 310
Helix 8	AA8	A	229	234	Right-handed alpha
Helix 9	AA9	B	40	50	Right-handed alpha
Helix 10	AB1	B	71	76	Right-handed alpha
Helix 11	AB2	B	94	104	Right-handed alpha
Helix 12	AB3	B	112	125	Right-handed alpha
Helix 13	AB4	B	142	150	Right-handed alpha
Helix 14	AB5	B	175	185	Right-handed alpha
Helix 15	AB6	B	196	204	Right-handed alpha
Helix 16	AB7	B	220	225	Right-handed alpha
Helix 17	AB8	B	229	233	Right-handed 310
Helix 18	AB9	F	3	14	Right-handed alpha
Helix 19	AC1	F	21	37	Right-handed alpha
Helix 20	AC2	F	47	53	Right-handed alpha
Helix 21	AC3	F	55	82	Right-handed alpha
Helix 22	AC4	F	87	91	Right-handed 310
Helix 23	AC5	F	95	100	Right-handed alpha
Helix 24	AC6	F	103	118	Right-handed alpha
Helix 25	AC7	F	120	129	Right-handed alpha
Helix 26	AC8	F	270	279	Right-handed alpha
Helix 27	AC9	F	296	298	Right-handed 310
Helix 28	AD1	F	299	315	Right-handed alpha
Helix 29	AD2	F	333	345	Right-handed alpha
Helix 30	AD3	G	13	28	Right-handed alpha
Helix 31	AD4	G	28	36	Right-handed alpha
Helix 32	AD5	G	59	64	Right-handed alpha
Helix 33	AD6	G	71	79	Right-handed alpha
Helix 34	AD7	G	79	86	Right-handed alpha
Helix 35	AD8	G	89	94	Right-handed alpha
Helix 36	AD9	G	98	118	Right-handed alpha
Helix 37	AE1	G	124	138	Right-handed alpha
Helix 38	AE2	G	255	259	Right-handed 310
Helix 39	AE3	G	271	280	Right-handed alpha
Helix 40	AE4	G	281	297	Right-handed alpha
Helix 41	AE5	G	304	325	Right-handed alpha
Helix 42	AE6	G	327	334	Right-handed alpha
Helix 43	AE7	G	336	341	Right-handed alpha
Helix 44	AE8	G	342	357	Right-handed alpha

There are 7 sheets in PDB entry 6S8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	26	first strand
Strand 2	A	4	12	anti-parallel
Strand 3	A	59	62	anti-parallel
Strand 4	A	65	66	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	189	192	parallel
Strand 3	A	158	161	parallel
Strand 4	A	82	83	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	214	217	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	3	13	anti-parallel
Strand 3	B	23	27	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	20	first strand
Strand 2	B	3	13	anti-parallel
Strand 3	B	57	62	anti-parallel
Strand 4	B	65	66	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	32	35	parallel
Strand 3	B	206	210	parallel
Strand 4	B	215	219	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	159	161	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S8H

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8H