Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S8J entry

There are 12 chains in PDB entry 6S8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 SER 3VAL 112
H
 VAL 2SER 123
A
 SER 32GLU 235
B
 ALA 503PRO 612
O
 SER 3VAL 112
U
 SER 3VAL 112
D
 ALA 503PRO 612
F
 ALA 503PRO 612
C
 SER 32GLU 235
E
 SER 32GLU 235
P
 VAL 2SER 123
Y
 VAL 2SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6S8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
82 86Right-handed 310
Helix 2
AA2
H
28 32Right-handed 310
Helix 3
AA3
H
53 57Right-handed 310
Helix 4
AA4
A
59 61Right-handed 310
Helix 5
AA5
A
71 74Right-handed 310
Helix 6
AA6
A
78 84Right-handed alpha
Helix 7
AA7
B
538 542Right-handed 310
Helix 8
AA8
B
550 552Right-handed 310
Helix 9
AA9
B
553 576Right-handed alpha
Helix 10
AB1
B
583 598Right-handed alpha
Helix 11
AB2
O
82 86Right-handed 310
Helix 12
AB3
U
82 86Right-handed 310
Helix 13
AB4
D
538 542Right-handed 310
Helix 14
AB5
D
550 552Right-handed 310
Helix 15
AB6
D
553 576Right-handed alpha
Helix 16
AB7
D
583 598Right-handed alpha
Helix 17
AB8
F
538 542Right-handed 310
Helix 18
AB9
F
550 552Right-handed 310
Helix 19
AC1
F
553 576Right-handed alpha
Helix 20
AC2
F
583 598Right-handed alpha
Helix 21
AC3
C
59 61Right-handed 310
Helix 22
AC4
C
71 74Right-handed 310
Helix 23
AC5
C
78 84Right-handed alpha
Helix 24
AC6
E
59 61Right-handed 310
Helix 25
AC7
E
71 74Right-handed 310
Helix 26
AC8
E
78 84Right-handed alpha
Helix 27
AC9
P
28 32Right-handed 310
Helix 28
AD1
P
53 57Right-handed 310
Helix 29
AD2
Y
28 32Right-handed 310
Helix 30
AD3
Y
53 57Right-handed 310
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There are 33 sheets in PDB entry 6S8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
108 111parallel
Strand 3
L
88 95anti-parallel
Strand 4
L
37 41anti-parallel
Strand 5
L
48 51anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
108 111parallel
Strand 3
L
88 95anti-parallel
Strand 4
L
101 104anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 24first strand
Strand 2
L
73 79anti-parallel
Strand 3
L
65 70anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
80 85anti-parallel
Strand 4
H
70 75anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
60 62first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
94 100anti-parallel
Strand 5
H
118 120anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
63 69anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
177 185parallel
Strand 4
A
159 161anti-parallel
Strand 5
A
165 167anti-parallel
Strand 6
A
96 98anti-parallel
Strand 7
B
580 581parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
151 154anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
B
515 519anti-parallel
Strand 3
B
544 548anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
135 144parallel
Strand 3
A
216 223parallel
Strand 4
A
231 234anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
601 602first strand
Strand 2
F
610 611parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
610 611first strand
Strand 2
D
601 602parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
10 12first strand
Strand 2
O
108 111parallel
Strand 3
O
88 95anti-parallel
Strand 4
O
37 41anti-parallel
Strand 5
O
48 51anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
10 12first strand
Strand 2
O
108 111parallel
Strand 3
O
88 95anti-parallel
Strand 4
O
101 104anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
18 24first strand
Strand 2
O
73 79anti-parallel
Strand 3
O
65 70anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
10 12first strand
Strand 2
U
108 111parallel
Strand 3
U
88 95anti-parallel
Strand 4
U
37 41anti-parallel
Strand 5
U
48 51anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
10 12first strand
Strand 2
U
108 111parallel
Strand 3
U
88 95anti-parallel
Strand 4
U
101 104anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
18 24first strand
Strand 2
U
73 79anti-parallel
Strand 3
U
65 70anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
544 548first strand
Strand 2
D
515 519anti-parallel
Strand 3
C
101 103anti-parallel
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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
580 581first strand
Strand 2
C
96 98parallel
Strand 3
C
165 167anti-parallel
Strand 4
C
159 161anti-parallel
Strand 5
C
177 185anti-parallel
Strand 6
C
35 39parallel
Strand 7
C
42 45anti-parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
580 581first strand
Strand 2
C
96 98parallel
Strand 3
C
165 167anti-parallel
Strand 4
C
159 161anti-parallel
Strand 5
C
177 185anti-parallel
Strand 6
C
63 69anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
610 611first strand
Strand 2
F
601 602parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
544 548first strand
Strand 2
F
515 519anti-parallel
Strand 3
E
101 103anti-parallel
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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
580 581first strand
Strand 2
E
96 98parallel
Strand 3
E
165 167anti-parallel
Strand 4
E
159 161anti-parallel
Strand 5
E
177 185anti-parallel
Strand 6
E
35 39parallel
Strand 7
E
42 45anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
580 581first strand
Strand 2
E
96 98parallel
Strand 3
E
165 167anti-parallel
Strand 4
E
159 161anti-parallel
Strand 5
E
177 185anti-parallel
Strand 6
E
63 69anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 89first strand
Strand 2
C
151 154anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 114first strand
Strand 2
C
135 144parallel
Strand 3
C
216 223parallel
Strand 4
C
231 234anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 89first strand
Strand 2
E
151 154anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 114first strand
Strand 2
E
135 144parallel
Strand 3
E
216 223parallel
Strand 4
E
231 234anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
3 7first strand
Strand 2
P
18 25anti-parallel
Strand 3
P
80 85anti-parallel
Strand 4
P
70 75anti-parallel
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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
60 62first strand
Strand 2
P
45 51anti-parallel
Strand 3
P
34 39anti-parallel
Strand 4
P
94 100anti-parallel
Strand 5
P
118 120anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
3 7first strand
Strand 2
Y
18 25anti-parallel
Strand 3
Y
80 85anti-parallel
Strand 4
Y
70 75anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
60 62first strand
Strand 2
Y
45 51anti-parallel
Strand 3
Y
34 39anti-parallel
Strand 4
Y
94 100anti-parallel
Strand 5
Y
118 120anti-parallel
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