Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S8M entry

There are 3 chains in PDB entry 6S8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 GLU 101PHE 465
B
 ARG 2ILE 430
A
 MET 1ASP 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6S8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
116 124Right-handed alpha
Helix 2
AA2
K
164 170Right-handed alpha
Helix 3
AA3
K
173 182Right-handed alpha
Helix 4
AA4
K
197 203Right-handed alpha
Helix 5
AA5
K
218 232Right-handed alpha
Helix 6
AA6
K
289 291Right-handed 310
Helix 7
AA7
K
292 303Right-handed alpha
Helix 8
AA8
K
373 396Right-handed alpha
Helix 9
AA9
K
409 415Right-handed alpha
Helix 10
AB1
K
445 451Right-handed alpha
Helix 11
AB2
B
10 29Right-handed alpha
Helix 12
AB3
B
41 46Right-handed alpha
Helix 13
AB4
B
73 78Right-handed alpha
Helix 14
AB5
B
100 105Right-handed alpha
Helix 15
AB6
B
108 126Right-handed alpha
Helix 16
AB7
B
142 159Right-handed alpha
Helix 17
AB8
B
180 195Right-handed alpha
Helix 18
AB9
B
204 212Right-handed alpha
Helix 19
AC1
B
221 237Right-handed alpha
Helix 20
AC2
B
250 258Right-handed alpha
Helix 21
AC3
B
285 294Right-handed alpha
Helix 22
AC4
B
295 299Right-handed 310
Helix 23
AC5
B
322 337Right-handed alpha
Helix 24
AC6
B
373 391Right-handed alpha
Helix 25
AC7
B
395 400Right-handed alpha
Helix 26
AC8
B
406 420Right-handed alpha
Helix 27
AC9
B
421 425Right-handed 310
Helix 28
AD1
A
10 28Right-handed alpha
Helix 29
AD2
A
77 83Right-handed alpha
Helix 30
AD3
A
106 112Right-handed alpha
Helix 31
AD4
A
112 120Right-handed alpha
Helix 32
AD5
A
122 132Right-handed alpha
Helix 33
AD6
A
148 166Right-handed alpha
Helix 34
AD7
A
186 193Right-handed alpha
Helix 35
AD8
A
194 201Right-handed alpha
Helix 36
AD9
A
211 219Right-handed alpha
Helix 37
AE1
A
227 241Right-handed alpha
Helix 38
AE2
A
242 247Right-handed alpha
Helix 39
AE3
A
255 263Right-handed alpha
Helix 40
AE4
A
281 286Right-handed alpha
Helix 41
AE5
A
291 300Right-handed alpha
Helix 42
AE6
A
301 305Right-handed 310
Helix 43
AE7
A
329 341Right-handed alpha
Helix 44
AE8
A
388 404Right-handed alpha
Helix 45
AE9
A
409 414Right-handed alpha
Helix 46
AF1
A
419 440Right-handed alpha
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There are 9 sheets in PDB entry 6S8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
158 159first strand
Strand 2
K
107 111parallel
Strand 3
K
424 429parallel
Strand 4
K
186 191parallel
Strand 5
K
356 359parallel
Strand 6
K
319 326anti-parallel
Strand 7
K
240 247anti-parallel
Strand 8
K
252 254anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
158 159first strand
Strand 2
K
107 111parallel
Strand 3
K
424 429parallel
Strand 4
K
186 191parallel
Strand 5
K
356 359parallel
Strand 6
K
319 326anti-parallel
Strand 7
K
240 247anti-parallel
Strand 8
K
285 287anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
64 67parallel
Strand 3
B
3 9parallel
Strand 4
B
130 134parallel
Strand 5
B
163 166parallel
Strand 6
B
198 200parallel
Strand 7
B
265 271parallel
Strand 8
B
363 370anti-parallel
Strand 9
B
312 319anti-parallel
Strand 10
B
349 354parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
60 61anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
202 203parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
71 73parallel
Strand 3
A
6 9parallel
Strand 4
A
138 142parallel
Strand 5
A
169 171parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
66 67anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
208 209parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
377 385anti-parallel
Strand 3
A
316 325anti-parallel
Strand 4
A
357 359parallel
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