Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S8N entry

There are 5 chains in PDB entry 6S8N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 240
B	ALA 2	PHE 239
C	MET 1	MET 24
F	ILE 2	VAL 353
G	VAL 6	SER 360

There are 39 helices in PDB entry 6S8N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	51	Right-handed alpha
Helix 2	AA2	A	71	76	Right-handed alpha
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	117	125	Right-handed alpha
Helix 5	AA5	A	145	153	Right-handed alpha
Helix 6	AA6	A	172	186	Right-handed alpha
Helix 7	AA7	A	220	225	Right-handed alpha
Helix 8	AA8	A	229	234	Right-handed alpha
Helix 9	AA9	B	40	51	Right-handed alpha
Helix 10	AB1	B	71	76	Right-handed alpha
Helix 11	AB2	B	94	101	Right-handed alpha
Helix 12	AB3	B	110	126	Right-handed alpha
Helix 13	AB4	B	139	152	Right-handed alpha
Helix 14	AB5	B	172	185	Right-handed alpha
Helix 15	AB6	B	196	201	Right-handed alpha
Helix 16	AB7	B	220	226	Right-handed alpha
Helix 17	AB8	B	227	234	Right-handed alpha
Helix 18	AB9	C	5	23	Right-handed alpha
Helix 19	AC1	F	3	37	Right-handed alpha
Helix 20	AC2	F	49	54	Right-handed alpha
Helix 21	AC3	F	55	82	Right-handed alpha
Helix 22	AC4	F	85	92	Right-handed alpha
Helix 23	AC5	F	95	110	Right-handed alpha
Helix 24	AC6	F	266	282	Right-handed alpha
Helix 25	AC7	F	296	298	Right-handed 310
Helix 26	AC8	F	299	318	Right-handed alpha
Helix 27	AC9	F	318	323	Right-handed alpha
Helix 28	AD1	F	328	347	Right-handed alpha
Helix 29	AD2	G	7	33	Right-handed alpha
Helix 30	AD3	G	54	59	Right-handed alpha
Helix 31	AD4	G	59	86	Right-handed alpha
Helix 32	AD5	G	110	118	Right-handed alpha
Helix 33	AD6	G	119	124	Right-handed alpha
Helix 34	AD7	G	124	134	Right-handed alpha
Helix 35	AD8	G	272	280	Right-handed alpha
Helix 36	AD9	G	282	295	Right-handed alpha
Helix 37	AE1	G	304	325	Right-handed alpha
Helix 38	AE2	G	328	333	Right-handed alpha
Helix 39	AE3	G	342	356	Right-handed alpha

There are 6 sheets in PDB entry 6S8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	3	5	anti-parallel
Strand 3	A	61	62	anti-parallel
Strand 4	A	65	66	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	17	22	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	158	161	parallel
Strand 3	A	190	192	parallel
Strand 4	A	31	33	parallel
Strand 5	A	206	207	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	214	217	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	27	first strand
Strand 2	B	3	13	anti-parallel
Strand 3	B	57	62	anti-parallel
Strand 4	B	65	66	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	159	162	parallel
Strand 3	B	191	193	parallel
Strand 4	B	32	35	parallel
Strand 5	B	206	210	parallel
Strand 6	B	215	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S8N

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8N