Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S8O entry

There is 1 chain in PDB entry 6S8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 402	ASP 2125

There are 82 helices in PDB entry 6S8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	410	415	Right-handed alpha
Helix 2	AA2	B	418	422	Right-handed 310
Helix 3	AA3	B	468	472	Right-handed 310
Helix 4	AA4	B	482	488	Right-handed alpha
Helix 5	AA5	B	490	495	Right-handed alpha
Helix 6	AA6	B	504	508	Right-handed 310
Helix 7	AA7	B	509	522	Right-handed alpha
Helix 8	AA8	B	523	524	Right-handed 310
Helix 9	AA9	B	525	529	Right-handed 310
Helix 10	AB1	B	544	558	Right-handed alpha
Helix 11	AB2	B	559	563	Right-handed 310
Helix 12	AB3	B	589	597	Right-handed alpha
Helix 13	AB4	B	603	608	Right-handed alpha
Helix 14	AB5	B	616	622	Right-handed 310
Helix 15	AB6	B	624	643	Right-handed alpha
Helix 16	AB7	B	657	665	Right-handed alpha
Helix 17	AB8	B	677	681	Right-handed 310
Helix 18	AB9	B	696	713	Right-handed alpha
Helix 19	AC1	B	729	745	Right-handed alpha
Helix 20	AC2	B	761	767	Right-handed alpha
Helix 21	AC3	B	794	803	Right-handed alpha
Helix 22	AC4	B	812	819	Right-handed alpha
Helix 23	AC5	B	845	854	Right-handed alpha
Helix 24	AC6	B	877	883	Right-handed alpha
Helix 25	AC7	B	896	907	Right-handed alpha
Helix 26	AC8	B	912	921	Right-handed alpha
Helix 27	AC9	B	923	932	Right-handed alpha
Helix 28	AD1	B	940	945	Right-handed alpha
Helix 29	AD2	B	951	967	Right-handed alpha
Helix 30	AD3	B	982	991	Right-handed alpha
Helix 31	AD4	B	994	1005	Right-handed alpha
Helix 32	AD5	B	1010	1020	Right-handed alpha
Helix 33	AD6	B	1021	1025	Right-handed 310
Helix 34	AD7	B	1030	1032	Right-handed 310
Helix 35	AD8	B	1033	1042	Right-handed alpha
Helix 36	AD9	B	1053	1068	Right-handed alpha
Helix 37	AE1	B	1074	1087	Right-handed alpha
Helix 38	AE2	B	1087	1103	Right-handed alpha
Helix 39	AE3	B	1104	1121	Right-handed alpha
Helix 40	AE4	B	1127	1132	Right-handed 310
Helix 41	AE5	B	1136	1144	Right-handed alpha
Helix 42	AE6	B	1150	1154	Right-handed 310
Helix 43	AE7	B	1157	1164	Right-handed alpha
Helix 44	AE8	B	1170	1179	Right-handed alpha
Helix 45	AE9	B	1308	1312	Right-handed 310
Helix 46	AF1	B	1314	1319	Right-handed alpha
Helix 47	AF2	B	1329	1340	Right-handed alpha
Helix 48	AF3	B	1356	1370	Right-handed alpha
Helix 49	AF4	B	1382	1398	Right-handed alpha
Helix 50	AF5	B	1411	1422	Right-handed alpha
Helix 51	AF6	B	1428	1438	Right-handed alpha
Helix 52	AF7	B	1442	1446	Right-handed 310
Helix 53	AF8	B	1456	1460	Right-handed 310
Helix 54	AF9	B	1464	1477	Right-handed alpha
Helix 55	AG1	B	1496	1504	Right-handed alpha
Helix 56	AG2	B	1515	1519	Right-handed 310
Helix 57	AG3	B	1534	1541	Right-handed alpha
Helix 58	AG4	B	1542	1554	Right-handed alpha
Helix 59	AG5	B	1566	1583	Right-handed alpha
Helix 60	AG6	B	1593	1596	Right-handed 310
Helix 61	AG7	B	1597	1603	Right-handed alpha
Helix 62	AG8	B	1606	1613	Right-handed alpha
Helix 63	AG9	B	1625	1638	Right-handed alpha
Helix 64	AH1	B	1680	1690	Right-handed alpha
Helix 65	AH2	B	1710	1718	Right-handed alpha
Helix 66	AH3	B	1728	1731	Right-handed 310
Helix 67	AH4	B	1732	1742	Right-handed alpha
Helix 68	AH5	B	1747	1755	Right-handed alpha
Helix 69	AH6	B	1758	1764	Right-handed alpha
Helix 70	AH7	B	1768	1772	Right-handed 310
Helix 71	AH8	B	1777	1799	Right-handed alpha
Helix 72	AH9	B	1813	1822	Right-handed alpha
Helix 73	AI1	B	1825	1836	Right-handed alpha
Helix 74	AI2	B	1841	1851	Right-handed alpha
Helix 75	AI3	B	1852	1856	Right-handed 310
Helix 76	AI4	B	1866	1873	Right-handed alpha
Helix 77	AI5	B	1886	1900	Right-handed alpha
Helix 78	AI6	B	1909	1918	Right-handed alpha
Helix 79	AI7	B	1918	1934	Right-handed alpha
Helix 80	AI8	B	1936	1951	Right-handed alpha
Helix 81	AI9	B	1967	1975	Right-handed 310
Helix 82	AJ1	B	2006	2014	Right-handed alpha

There are 13 sheets in PDB entry 6S8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	438	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	685	692	anti-parallel
Strand 4	B	865	866	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	567	first strand
Strand 2	B	585	588	parallel
Strand 3	B	537	541	parallel
Strand 4	B	609	614	parallel
Strand 5	B	647	653	parallel
Strand 6	B	499	503	parallel
Strand 7	B	673	675	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	784	first strand
Strand 2	B	808	810	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	834	first strand
Strand 2	B	841	843	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	970	972	first strand
Strand 2	B	979	981	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1184	1192	first strand
Strand 2	B	1197	1206	anti-parallel
Strand 3	B	1250	1257	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1233	1242	first strand
Strand 2	B	1218	1226	anti-parallel
Strand 3	B	1267	1272	anti-parallel
Strand 4	B	1279	1280	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1407	first strand
Strand 2	B	1424	1427	parallel
Strand 3	B	1376	1379	parallel
Strand 4	B	1450	1454	parallel
Strand 5	B	1487	1491	parallel
Strand 6	B	1347	1349	parallel
Strand 7	B	1511	1513	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1523	1530	first strand
Strand 2	B	1700	1707	parallel
Strand 3	B	1660	1663	parallel
Strand 4	B	1559	1563	parallel
Strand 5	B	1643	1647	parallel
Strand 6	B	1617	1620	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1667	1670	first strand
Strand 2	B	1675	1678	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1802	1804	first strand
Strand 2	B	1810	1812	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2034	2036	first strand
Strand 2	B	2093	2095	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2076	2083	first strand
Strand 2	B	2063	2070	anti-parallel
Strand 3	B	2102	2110	anti-parallel
Strand 4	B	2118	2124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8O