Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S8R entry

There are 2 chains in PDB entry 6S8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 265VAL 431
B
 ASP 343GLY 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6S8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
278 280Right-handed 310
Helix 2
AA2
A
281 293Right-handed alpha
Helix 3
AA3
A
304 319Right-handed alpha
Helix 4
AA4
A
330 344Right-handed alpha
Helix 5
AA5
A
375 384Right-handed alpha
Helix 6
AA6
A
400 402Right-handed 310
Helix 7
AA7
A
403 415Right-handed alpha
Helix 8
AA8
A
426 430Right-handed 310
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There are 2 sheets in PDB entry 6S8R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 325first strand
Strand 2
A
348 351parallel
Strand 3
A
297 301parallel
Strand 4
A
364 369parallel
Strand 5
A
393 399parallel
Strand 6
A
270 276parallel
Strand 7
A
419 420parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 361first strand
Strand 2
B
367 368anti-parallel
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