Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S8S entry

There are 4 chains in PDB entry 6S8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 296HIS 463
B
 ASP 190GLU 226
C
 LYS 296GLU 468
D
 ASP 190GLU 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6S8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
306 308Right-handed 310
Helix 2
AA2
A
309 321Right-handed alpha
Helix 3
AA3
A
332 347Right-handed alpha
Helix 4
AA4
A
358 371Right-handed alpha
Helix 5
AA5
A
403 411Right-handed alpha
Helix 6
AA6
A
428 430Right-handed 310
Helix 7
AA7
A
431 443Right-handed alpha
Helix 8
AA8
A
454 458Right-handed 310
Helix 9
AA9
B
205 211Right-handed alpha
Helix 10
AB1
B
214 226Right-handed alpha
Helix 11
AB2
C
306 308Right-handed 310
Helix 12
AB3
C
309 321Right-handed alpha
Helix 13
AB4
C
332 347Right-handed alpha
Helix 14
AB5
C
358 371Right-handed alpha
Helix 15
AB6
C
403 412Right-handed alpha
Helix 16
AB7
C
428 430Right-handed 310
Helix 17
AB8
C
431 443Right-handed alpha
Helix 18
AB9
C
454 458Right-handed 310
Helix 19
AC1
D
195 199Right-handed 310
Helix 20
AC2
D
205 211Right-handed alpha
Helix 21
AC3
D
214 226Right-handed alpha
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There are 2 sheets in PDB entry 6S8S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
376 379parallel
Strand 3
A
325 329parallel
Strand 4
A
392 397parallel
Strand 5
A
422 427parallel
Strand 6
A
299 304parallel
Strand 7
A
447 448parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
351 353first strand
Strand 2
C
376 379parallel
Strand 3
C
325 329parallel
Strand 4
C
392 397parallel
Strand 5
C
421 427parallel
Strand 6
C
298 304parallel
Strand 7
C
447 448parallel
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