Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S8U entry

There are 2 chains in PDB entry 6S8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 733CYS 1200
B
 GLN 1GLY 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6S8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
747 765Right-handed alpha
Helix 2
AA2
A
768 772Right-handed 310
Helix 3
AA3
A
774 778Right-handed 310
Helix 4
AA4
A
791 795Right-handed 310
Helix 5
AA5
A
844 849Right-handed alpha
Helix 6
AA6
A
852 857Right-handed alpha
Helix 7
AA7
A
859 865Right-handed alpha
Helix 8
AA8
A
868 896Right-handed alpha
Helix 9
AA9
A
903 926Right-handed alpha
Helix 10
AB1
A
933 954Right-handed alpha
Helix 11
AB2
A
977 1001Right-handed alpha
Helix 12
AB3
A
1007 1011Right-handed 310
Helix 13
AB4
A
1019 1023Right-handed 310
Helix 14
AB5
A
1024 1053Right-handed alpha
Helix 15
AB6
A
1066 1107Right-handed alpha
Helix 16
AB7
A
1119 1134Right-handed alpha
Helix 17
AB8
A
1144 1147Right-handed 310
Helix 18
AB9
A
1148 1156Right-handed alpha
Helix 19
AC1
B
115 117Right-handed 310
Helix 20
AC2
B
149 153Right-handed 310
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There are 8 sheets in PDB entry 6S8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 830first strand
Strand 2
A
842 843anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1112 1114first strand
Strand 2
B
8 12anti-parallel
Strand 3
B
79 83parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
15 23anti-parallel
Strand 3
B
49 57anti-parallel
Strand 4
B
41 42anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
64 67anti-parallel
Strand 3
B
74 77anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 91first strand
Strand 2
B
103 111anti-parallel
Strand 3
B
140 147anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
183 185parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 134first strand
Strand 2
B
119 125anti-parallel
Strand 3
B
156 164anti-parallel
Strand 4
B
172 176anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 134first strand
Strand 2
B
119 125anti-parallel
Strand 3
B
156 164anti-parallel
Strand 4
B
180 181anti-parallel
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