Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S8V entry

There are 4 chains in PDB entry 6S8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 7	GLY 178
B	ALA 114	ALA 529
C	ILE 8	SER 179
D	GLY 109	ALA 528

There are 49 helices in PDB entry 6S8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	23	28	Right-handed alpha
Helix 3	AA3	A	145	159	Right-handed alpha
Helix 4	AA4	A	162	164	Right-handed 310
Helix 5	AA5	B	116	120	Right-handed 310
Helix 6	AA6	B	128	134	Right-handed alpha
Helix 7	AA7	B	139	145	Right-handed alpha
Helix 8	AA8	B	146	153	Right-handed alpha
Helix 9	AA9	B	181	184	Right-handed 310
Helix 10	AB1	B	185	199	Right-handed alpha
Helix 11	AB2	B	221	240	Right-handed alpha
Helix 12	AB3	B	248	252	Right-handed 310
Helix 13	AB4	B	254	270	Right-handed alpha
Helix 14	AB5	B	283	292	Right-handed alpha
Helix 15	AB6	B	310	325	Right-handed alpha
Helix 16	AB7	B	339	343	Right-handed 310
Helix 17	AB8	B	345	347	Right-handed 310
Helix 18	AB9	B	348	357	Right-handed alpha
Helix 19	AC1	B	368	372	Right-handed 310
Helix 20	AC2	B	374	378	Right-handed 310
Helix 21	AC3	B	403	406	Right-handed 310
Helix 22	AC4	B	407	413	Right-handed alpha
Helix 23	AC5	B	417	430	Right-handed alpha
Helix 24	AC6	B	432	438	Right-handed alpha
Helix 25	AC7	B	478	482	Right-handed 310
Helix 26	AC8	C	12	16	Right-handed 310
Helix 27	AC9	C	145	159	Right-handed alpha
Helix 28	AD1	C	162	164	Right-handed 310
Helix 29	AD2	D	116	121	Right-handed 310
Helix 30	AD3	D	128	134	Right-handed alpha
Helix 31	AD4	D	139	145	Right-handed alpha
Helix 32	AD5	D	146	153	Right-handed alpha
Helix 33	AD6	D	181	184	Right-handed 310
Helix 34	AD7	D	185	199	Right-handed alpha
Helix 35	AD8	D	221	239	Right-handed alpha
Helix 36	AD9	D	248	252	Right-handed 310
Helix 37	AE1	D	254	270	Right-handed alpha
Helix 38	AE2	D	283	292	Right-handed alpha
Helix 39	AE3	D	310	325	Right-handed alpha
Helix 40	AE4	D	339	343	Right-handed 310
Helix 41	AE5	D	345	347	Right-handed 310
Helix 42	AE6	D	348	357	Right-handed alpha
Helix 43	AE7	D	368	372	Right-handed 310
Helix 44	AE8	D	374	378	Right-handed 310
Helix 45	AE9	D	403	406	Right-handed 310
Helix 46	AF1	D	407	413	Right-handed alpha
Helix 47	AF2	D	417	432	Right-handed alpha
Helix 48	AF3	D	432	437	Right-handed alpha
Helix 49	AF4	D	478	482	Right-handed 310

There are 10 sheets in PDB entry 6S8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	29	38	anti-parallel
Strand 3	A	130	139	anti-parallel
Strand 4	A	118	127	anti-parallel
Strand 5	A	105	113	anti-parallel
Strand 6	A	91	94	anti-parallel
Strand 7	A	76	85	anti-parallel
Strand 8	A	64	71	anti-parallel
Strand 9	A	53	58	anti-parallel
Strand 10	A	29	38	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	274	278	parallel
Strand 3	B	243	246	parallel
Strand 4	B	202	206	parallel
Strand 5	B	157	160	parallel
Strand 6	B	123	126	parallel
Strand 7	B	362	366	parallel
Strand 8	B	331	332	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	174	179	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	442	first strand
Strand 2	B	449	455	anti-parallel
Strand 3	B	461	467	anti-parallel
Strand 4	B	520	525	anti-parallel
Strand 5	B	491	497	anti-parallel
Strand 6	B	507	509	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	514	515	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	167	first strand
Strand 2	C	29	38	anti-parallel
Strand 3	C	130	139	anti-parallel
Strand 4	C	118	127	anti-parallel
Strand 5	C	105	113	anti-parallel
Strand 6	C	91	94	anti-parallel
Strand 7	C	76	85	anti-parallel
Strand 8	C	64	71	anti-parallel
Strand 9	C	53	58	anti-parallel
Strand 10	C	29	38	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	274	278	parallel
Strand 3	D	243	246	parallel
Strand 4	D	202	206	parallel
Strand 5	D	157	160	parallel
Strand 6	D	123	126	parallel
Strand 7	D	362	366	parallel
Strand 8	D	331	332	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	174	179	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	440	442	first strand
Strand 2	D	449	454	anti-parallel
Strand 3	D	461	467	anti-parallel
Strand 4	D	520	525	anti-parallel
Strand 5	D	491	497	anti-parallel
Strand 6	D	507	509	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	475	first strand
Strand 2	D	513	515	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8V