Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S8W entry

There are 4 chains in PDB entry 6S8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 16	SER 525
B	PRO 16	LEU 526
C	PRO 16	GLU 523
D	PRO 16	LEU 526

There are 99 helices in PDB entry 6S8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	20	Right-handed 310
Helix 2	AA2	A	21	28	Right-handed alpha
Helix 3	AA3	A	41	45	Right-handed 310
Helix 4	AA4	A	47	53	Right-handed 310
Helix 5	AA5	A	59	63	Right-handed 310
Helix 6	AA6	A	64	69	Right-handed alpha
Helix 7	AA7	A	73	80	Right-handed alpha
Helix 8	AA8	A	81	84	Right-handed 310
Helix 9	AA9	A	96	100	Right-handed 310
Helix 10	AB1	A	116	124	Right-handed alpha
Helix 11	AB2	A	142	147	Right-handed alpha
Helix 12	AB3	A	155	170	Right-handed alpha
Helix 13	AB4	A	184	197	Right-handed alpha
Helix 14	AB5	A	210	216	Right-handed alpha
Helix 15	AB6	A	217	221	Right-handed 310
Helix 16	AB7	A	235	245	Right-handed alpha
Helix 17	AB8	A	274	288	Right-handed alpha
Helix 18	AB9	A	298	302	Right-handed 310
Helix 19	AC1	A	319	327	Right-handed alpha
Helix 20	AC2	A	330	335	Right-handed 310
Helix 21	AC3	A	351	355	Right-handed 310
Helix 22	AC4	A	363	375	Right-handed alpha
Helix 23	AC5	A	381	393	Right-handed alpha
Helix 24	AC6	A	396	427	Right-handed alpha
Helix 25	AC7	A	465	475	Right-handed alpha
Helix 26	AC8	A	483	486	Right-handed 310
Helix 27	AC9	A	505	524	Right-handed alpha
Helix 28	AD1	B	18	20	Right-handed 310
Helix 29	AD2	B	21	28	Right-handed alpha
Helix 30	AD3	B	41	45	Right-handed 310
Helix 31	AD4	B	47	53	Right-handed 310
Helix 32	AD5	B	59	63	Right-handed 310
Helix 33	AD6	B	64	70	Right-handed alpha
Helix 34	AD7	B	96	100	Right-handed 310
Helix 35	AD8	B	116	124	Right-handed alpha
Helix 36	AD9	B	142	148	Right-handed alpha
Helix 37	AE1	B	155	170	Right-handed alpha
Helix 38	AE2	B	184	197	Right-handed alpha
Helix 39	AE3	B	210	218	Right-handed alpha
Helix 40	AE4	B	219	221	Right-handed 310
Helix 41	AE5	B	235	245	Right-handed alpha
Helix 42	AE6	B	247	252	Right-handed alpha
Helix 43	AE7	B	274	289	Right-handed alpha
Helix 44	AE8	B	319	327	Right-handed alpha
Helix 45	AE9	B	363	375	Right-handed alpha
Helix 46	AF1	B	381	393	Right-handed alpha
Helix 47	AF2	B	396	427	Right-handed alpha
Helix 48	AF3	B	460	475	Right-handed alpha
Helix 49	AF4	B	483	486	Right-handed 310
Helix 50	AF5	B	507	524	Right-handed alpha
Helix 51	AF6	C	18	20	Right-handed 310
Helix 52	AF7	C	21	28	Right-handed alpha
Helix 53	AF8	C	41	45	Right-handed 310
Helix 54	AF9	C	47	53	Right-handed 310
Helix 55	AG1	C	64	69	Right-handed alpha
Helix 56	AG2	C	73	79	Right-handed alpha
Helix 57	AG3	C	80	82	Right-handed 310
Helix 58	AG4	C	96	100	Right-handed 310
Helix 59	AG5	C	116	124	Right-handed alpha
Helix 60	AG6	C	155	170	Right-handed alpha
Helix 61	AG7	C	184	197	Right-handed alpha
Helix 62	AG8	C	210	218	Right-handed alpha
Helix 63	AG9	C	219	221	Right-handed 310
Helix 64	AH1	C	235	245	Right-handed alpha
Helix 65	AH2	C	247	252	Right-handed alpha
Helix 66	AH3	C	274	288	Right-handed alpha
Helix 67	AH4	C	298	302	Right-handed 310
Helix 68	AH5	C	319	327	Right-handed alpha
Helix 69	AH6	C	331	335	Right-handed 310
Helix 70	AH7	C	363	375	Right-handed alpha
Helix 71	AH8	C	381	393	Right-handed alpha
Helix 72	AH9	C	396	427	Right-handed alpha
Helix 73	AI1	C	465	475	Right-handed alpha
Helix 74	AI2	C	483	486	Right-handed 310
Helix 75	AI3	C	505	523	Right-handed alpha
Helix 76	AI4	D	21	29	Right-handed alpha
Helix 77	AI5	D	41	45	Right-handed 310
Helix 78	AI6	D	47	53	Right-handed 310
Helix 79	AI7	D	64	69	Right-handed alpha
Helix 80	AI8	D	96	100	Right-handed 310
Helix 81	AI9	D	116	124	Right-handed alpha
Helix 82	AJ1	D	132	137	Right-handed alpha
Helix 83	AJ2	D	142	147	Right-handed alpha
Helix 84	AJ3	D	155	170	Right-handed alpha
Helix 85	AJ4	D	184	197	Right-handed alpha
Helix 86	AJ5	D	210	218	Right-handed alpha
Helix 87	AJ6	D	219	221	Right-handed 310
Helix 88	AJ7	D	235	245	Right-handed alpha
Helix 89	AJ8	D	247	252	Right-handed alpha
Helix 90	AJ9	D	274	288	Right-handed alpha
Helix 91	AK1	D	298	302	Right-handed 310
Helix 92	AK2	D	319	327	Right-handed alpha
Helix 93	AK3	D	351	355	Right-handed 310
Helix 94	AK4	D	363	375	Right-handed alpha
Helix 95	AK5	D	381	393	Right-handed alpha
Helix 96	AK6	D	396	427	Right-handed alpha
Helix 97	AK7	D	460	474	Right-handed alpha
Helix 98	AK8	D	483	485	Right-handed 310
Helix 99	AK9	D	505	524	Right-handed alpha

There are 18 sheets in PDB entry 6S8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	B	477	478	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	130	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	B	104	109	anti-parallel
Strand 4	B	125	130	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	182	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	340	345	anti-parallel
Strand 4	A	291	295	parallel
Strand 5	A	258	261	parallel
Strand 6	A	202	206	parallel
Strand 7	A	223	227	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	230	first strand
Strand 2	A	233	234	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	495	500	anti-parallel
Strand 4	A	480	481	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	B	88	89	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	182	first strand
Strand 2	B	357	362	anti-parallel
Strand 3	B	340	345	anti-parallel
Strand 4	B	291	295	parallel
Strand 5	B	258	261	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	206	first strand
Strand 2	B	223	227	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	233	234	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	432	434	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	495	500	anti-parallel
Strand 4	B	480	481	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	89	first strand
Strand 2	D	477	478	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	104	109	anti-parallel
Strand 3	D	104	109	anti-parallel
Strand 4	D	125	130	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	182	first strand
Strand 2	C	357	362	anti-parallel
Strand 3	C	340	345	anti-parallel
Strand 4	C	291	295	parallel
Strand 5	C	258	261	parallel
Strand 6	C	202	206	parallel
Strand 7	C	223	227	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	230	first strand
Strand 2	C	233	234	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	445	first strand
Strand 2	C	497	500	anti-parallel
Strand 3	C	480	481	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	182	first strand
Strand 2	D	357	362	anti-parallel
Strand 3	D	340	345	anti-parallel
Strand 4	D	291	295	parallel
Strand 5	D	258	261	parallel
Strand 6	D	202	206	parallel
Strand 7	D	223	227	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	230	first strand
Strand 2	D	233	234	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	432	434	first strand
Strand 2	D	442	447	anti-parallel
Strand 3	D	495	500	anti-parallel
Strand 4	D	480	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8W