Analysis of interatomic Contacts of Structural Units in PDB entry:
6S99


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S99 entry

There are 42 chains in PDB entry 6S99 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 205LEU 210
A
 GLN 212LEU 217
A
 GLU 220LEU 224
A
 ALA 226GLY 251
A
 ILE 253GLY 260
A
 GLY 262THR 309
A
 GLY 311THR 316
B
 SER 205LEU 210
B
 GLN 212LEU 217
B
 GLU 220LEU 224
B
 ALA 226GLY 251
B
 ILE 253GLY 260
B
 GLY 262THR 309
B
 GLY 311THR 316
C
 SER 205LEU 210
C
 GLN 212LEU 217
C
 GLU 220LEU 224
C
 ALA 226GLY 251
C
 ILE 253GLY 260
C
 GLY 262THR 309
C
 GLY 311THR 316
D
 SER 205LEU 210
D
 GLN 212LEU 217
D
 GLU 220LEU 224
D
 ALA 226GLY 251
D
 ILE 253GLY 260
D
 GLY 262THR 309
D
 GLY 311THR 316
E
 SER 205LEU 210
E
 GLN 212LEU 217
E
 GLU 220LEU 224
E
 ALA 226GLY 251
E
 ILE 253GLY 260
E
 GLY 262THR 309
E
 GLY 311THR 316
F
 SER 205LEU 210
F
 GLN 212LEU 217
F
 GLU 220LEU 224
F
 ALA 226GLY 251
F
 ILE 253GLY 260
F
 GLY 262THR 309
F
 GLY 311THR 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6S99. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
204 228Right-handed alpha
Helix 2
AA2
B
205 225Right-handed alpha
Helix 3
AA3
C
207 227Right-handed alpha
Helix 4
AA4
D
205 227Right-handed alpha
Helix 5
AA5
E
205 227Right-handed alpha
Helix 6
AA6
F
205 217Right-handed alpha
Helix 7
AA7
F
218 227Right-handed alpha
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There are 12 sheets in PDB entry 6S99. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 237first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
253 258anti-parallel
Strand 4
A
263 270anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 282first strand
Strand 2
A
285 294anti-parallel
Strand 3
A
297 303anti-parallel
Strand 4
A
308 310anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 237first strand
Strand 2
B
242 248anti-parallel
Strand 3
B
253 258anti-parallel
Strand 4
B
263 270anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 282first strand
Strand 2
B
285 294anti-parallel
Strand 3
B
297 303anti-parallel
Strand 4
B
308 310anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 237first strand
Strand 2
C
242 249anti-parallel
Strand 3
C
252 258anti-parallel
Strand 4
C
263 270anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
274 282first strand
Strand 2
C
285 294anti-parallel
Strand 3
C
297 303anti-parallel
Strand 4
C
309 310anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
231 237first strand
Strand 2
D
242 248anti-parallel
Strand 3
D
253 258anti-parallel
Strand 4
D
263 270anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
274 282first strand
Strand 2
D
285 294anti-parallel
Strand 3
D
297 303anti-parallel
Strand 4
D
308 310anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
231 237first strand
Strand 2
E
242 248anti-parallel
Strand 3
E
253 258anti-parallel
Strand 4
E
263 270anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
274 282first strand
Strand 2
E
285 294anti-parallel
Strand 3
E
297 303anti-parallel
Strand 4
E
308 310anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
231 237first strand
Strand 2
F
242 248anti-parallel
Strand 3
F
253 258anti-parallel
Strand 4
F
263 270anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
274 282first strand
Strand 2
F
285 294anti-parallel
Strand 3
F
297 303anti-parallel
Strand 4
F
308 310anti-parallel
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