Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S9A entry

There are 2 chains in PDB entry 6S9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 6GLY 743
B
 ALA 5ASP 744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6S9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
26 30Right-handed 310
Helix 3
AA3
A
43 53Right-handed alpha
Helix 4
AA4
A
93 107Right-handed alpha
Helix 5
AA5
A
151 165Right-handed alpha
Helix 6
AA6
A
180 183Right-handed 310
Helix 7
AA7
A
184 194Right-handed alpha
Helix 8
AA8
A
206 210Right-handed 310
Helix 9
AA9
A
216 221Right-handed alpha
Helix 10
AB1
A
248 262Right-handed alpha
Helix 11
AB2
A
268 272Right-handed 310
Helix 12
AB3
A
273 312Right-handed alpha
Helix 13
AB4
A
718 743Right-handed alpha
Helix 14
AB5
B
8 22Right-handed alpha
Helix 15
AB6
B
26 30Right-handed 310
Helix 16
AB7
B
43 53Right-handed alpha
Helix 17
AB8
B
93 109Right-handed alpha
Helix 18
AB9
B
151 165Right-handed alpha
Helix 19
AC1
B
180 183Right-handed 310
Helix 20
AC2
B
184 194Right-handed alpha
Helix 21
AC3
B
206 210Right-handed 310
Helix 22
AC4
B
216 221Right-handed alpha
Helix 23
AC5
B
248 262Right-handed alpha
Helix 24
AC6
B
268 272Right-handed 310
Helix 25
AC7
B
273 312Right-handed alpha
Helix 26
AC8
B
722 743Right-handed alpha
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There are 2 sheets in PDB entry 6S9A. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
69 75parallel
Strand 4
A
132 136anti-parallel
Strand 5
A
33 38parallel
Strand 6
A
169 176parallel
Strand 7
A
200 205parallel
Strand 8
A
231 233parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
80 83anti-parallel
Strand 3
B
120 126anti-parallel
Strand 4
B
69 75parallel
Strand 5
B
132 136anti-parallel
Strand 6
B
33 38parallel
Strand 7
B
169 176parallel
Strand 8
B
200 205parallel
Strand 9
B
231 233parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il