Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S9I entry

There is 1 chain in PDB entry 6S9I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 403	VAL 1656

There are 92 helices in PDB entry 6S9I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	418	422	Right-handed 310
Helix 2	AA2	B	465	467	Right-handed 310
Helix 3	AA3	B	468	472	Right-handed 310
Helix 4	AA4	B	482	494	Right-handed alpha
Helix 5	AA5	B	508	523	Right-handed alpha
Helix 6	AA6	B	532	536	Right-handed 310
Helix 7	AA7	B	544	560	Right-handed alpha
Helix 8	AA8	B	561	563	Right-handed 310
Helix 9	AA9	B	577	583	Right-handed alpha
Helix 10	AB1	B	589	598	Right-handed alpha
Helix 11	AB2	B	605	607	Right-handed 310
Helix 12	AB3	B	616	622	Right-handed 310
Helix 13	AB4	B	624	641	Right-handed alpha
Helix 14	AB5	B	657	665	Right-handed alpha
Helix 15	AB6	B	677	681	Right-handed 310
Helix 16	AB7	B	698	714	Right-handed alpha
Helix 17	AB8	B	727	742	Right-handed alpha
Helix 18	AB9	B	759	769	Right-handed alpha
Helix 19	AC1	B	797	802	Right-handed alpha
Helix 20	AC2	B	812	819	Right-handed alpha
Helix 21	AC3	B	845	854	Right-handed alpha
Helix 22	AC4	B	875	883	Right-handed alpha
Helix 23	AC5	B	896	907	Right-handed alpha
Helix 24	AC6	B	912	921	Right-handed alpha
Helix 25	AC7	B	923	932	Right-handed alpha
Helix 26	AC8	B	939	944	Right-handed alpha
Helix 27	AC9	B	949	967	Right-handed alpha
Helix 28	AD1	B	982	991	Right-handed alpha
Helix 29	AD2	B	994	1005	Right-handed alpha
Helix 30	AD3	B	1010	1019	Right-handed alpha
Helix 31	AD4	B	1020	1025	Right-handed 310
Helix 32	AD5	B	1030	1032	Right-handed 310
Helix 33	AD6	B	1033	1043	Right-handed alpha
Helix 34	AD7	B	1054	1069	Right-handed alpha
Helix 35	AD8	B	1074	1103	Right-handed alpha
Helix 36	AD9	B	1104	1121	Right-handed alpha
Helix 37	AE1	B	1127	1132	Right-handed 310
Helix 38	AE2	B	1140	1145	Right-handed alpha
Helix 39	AE3	B	1149	1153	Right-handed 310
Helix 40	AE4	B	1160	1165	Right-handed alpha
Helix 41	AE5	B	1167	1169	Right-handed 310
Helix 42	AE6	B	1170	1179	Right-handed alpha
Helix 43	AE7	B	1211	1216	Right-handed alpha
Helix 44	AE8	B	1244	1246	Right-handed 310
Helix 45	AE9	B	1308	1313	Right-handed 310
Helix 46	AF1	B	1314	1319	Right-handed alpha
Helix 47	AF2	B	1329	1341	Right-handed alpha
Helix 48	AF3	B	1355	1372	Right-handed alpha
Helix 49	AF4	B	1382	1398	Right-handed alpha
Helix 50	AF5	B	1411	1422	Right-handed alpha
Helix 51	AF6	B	1428	1437	Right-handed alpha
Helix 52	AF7	B	1442	1447	Right-handed alpha
Helix 53	AF8	B	1455	1461	Right-handed 310
Helix 54	AF9	B	1463	1482	Right-handed alpha
Helix 55	AG1	B	1496	1504	Right-handed alpha
Helix 56	AG2	B	1507	1509	Right-handed 310
Helix 57	AG3	B	1515	1519	Right-handed 310
Helix 58	AG4	B	1534	1554	Right-handed alpha
Helix 59	AG5	B	1565	1583	Right-handed alpha
Helix 60	AG6	B	1608	1615	Right-handed alpha
Helix 61	AG7	B	1625	1638	Right-handed alpha
Helix 62	AG8	B	1649	1653	Right-handed 310
Helix 63	AG9	B	1680	1689	Right-handed alpha
Helix 64	AH1	B	1710	1720	Right-handed alpha
Helix 65	AH2	B	1727	1731	Right-handed 310
Helix 66	AH3	B	1732	1742	Right-handed alpha
Helix 67	AH4	B	1747	1756	Right-handed alpha
Helix 68	AH5	B	1758	1767	Right-handed alpha
Helix 69	AH6	B	1768	1772	Right-handed 310
Helix 70	AH7	B	1777	1799	Right-handed alpha
Helix 71	AH8	B	1813	1823	Right-handed alpha
Helix 72	AH9	B	1825	1836	Right-handed alpha
Helix 73	AI1	B	1841	1851	Right-handed alpha
Helix 74	AI2	B	1852	1856	Right-handed 310
Helix 75	AI3	B	1886	1900	Right-handed alpha
Helix 76	AI4	B	1906	1933	Right-handed alpha
Helix 77	AI5	B	1935	1952	Right-handed alpha
Helix 78	AI6	B	1958	1963	Right-handed 310
Helix 79	AI7	B	1967	1976	Right-handed alpha
Helix 80	AI8	B	1981	1987	Right-handed alpha
Helix 81	AI9	B	1990	1995	Right-handed alpha
Helix 82	AJ1	B	2000	2014	Right-handed alpha
Helix 83	AJ2	J	2071	2081	Right-handed alpha
Helix 84	AJ3	J	2082	2088	Right-handed 310
Helix 85	AJ4	J	2108	2117	Right-handed alpha
Helix 86	AJ5	J	2166	2171	Right-handed alpha
Helix 87	AJ6	J	2189	2203	Right-handed alpha
Helix 88	AJ7	J	2231	2241	Right-handed alpha
Helix 89	AJ8	J	2252	2254	Right-handed 310
Helix 90	AJ9	J	2284	2288	Right-handed 310
Helix 91	AK1	J	2306	2309	Right-handed 310
Helix 92	AK2	J	2310	2316	Right-handed alpha

There are 15 sheets in PDB entry 6S9I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	436	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	685	692	anti-parallel
Strand 4	B	865	872	parallel
Strand 5	B	825	828	parallel
Strand 6	B	721	724	parallel
Strand 7	B	808	811	parallel
Strand 8	B	782	785	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	463	first strand
Strand 2	B	480	481	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	568	first strand
Strand 2	B	585	588	parallel
Strand 3	B	537	541	parallel
Strand 4	B	609	614	parallel
Strand 5	B	647	652	parallel
Strand 6	B	499	502	parallel
Strand 7	B	673	675	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	835	first strand
Strand 2	B	840	843	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1184	1192	first strand
Strand 2	B	1197	1206	anti-parallel
Strand 3	B	1250	1257	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1233	1242	first strand
Strand 2	B	1218	1226	anti-parallel
Strand 3	B	1265	1272	anti-parallel
Strand 4	B	1279	1285	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1405	1407	first strand
Strand 2	B	1424	1427	parallel
Strand 3	B	1376	1379	parallel
Strand 4	B	1450	1453	parallel
Strand 5	B	1486	1491	parallel
Strand 6	B	1346	1349	parallel
Strand 7	B	1511	1513	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1523	1530	first strand
Strand 2	B	1700	1707	parallel
Strand 3	B	1660	1664	parallel
Strand 4	B	1559	1563	parallel
Strand 5	B	1643	1647	parallel
Strand 6	B	1617	1620	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1667	1670	first strand
Strand 2	B	1675	1678	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1802	1805	first strand
Strand 2	B	1809	1812	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2017	2023	first strand
Strand 2	B	2037	2043	anti-parallel
Strand 3	B	2089	2092	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2075	2082	first strand
Strand 2	B	2064	2070	anti-parallel
Strand 3	B	2103	2110	anti-parallel
Strand 4	B	2121	2123	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2090	2092	first strand
Strand 2	J	2223	2230	parallel
Strand 3	J	2212	2217	anti-parallel
Strand 4	J	2173	2181	parallel
Strand 5	J	2125	2131	anti-parallel
Strand 6	J	2139	2146	anti-parallel
Strand 7	J	2103	2107	parallel
Strand 8	J	2260	2264	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2256	2258	first strand
Strand 2	J	2223	2230	anti-parallel
Strand 3	J	2212	2217	anti-parallel
Strand 4	J	2173	2181	parallel
Strand 5	J	2125	2131	anti-parallel
Strand 6	J	2139	2146	anti-parallel
Strand 7	J	2270	2274	parallel
Strand 8	J	2296	2298	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2151	2152	first strand
Strand 2	J	2157	2158	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S9I

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9I