Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S9J entry

There are 8 chains in PDB entry 6S9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 87	HIS 241
A	SER 195	ASN 378
D	GLU 87	GLN 238
C	PRO 197	ASN 378
F	PRO 89	CYS 237
E	PRO 197	ASN 378
H	LEU 88	HIS 241
G	PRO 197	ASN 378

There are 39 helices in PDB entry 6S9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	128	135	Right-handed 310
Helix 2	AA2	B	141	153	Right-handed alpha
Helix 3	AA3	B	182	184	Right-handed 310
Helix 4	AA4	B	185	200	Right-handed alpha
Helix 5	AA5	B	222	226	Right-handed 310
Helix 6	AA6	B	230	235	Right-handed alpha
Helix 7	AA7	A	239	246	Right-handed alpha
Helix 8	AA8	A	263	274	Right-handed alpha
Helix 9	AA9	A	338	347	Right-handed alpha
Helix 10	AB1	A	354	358	Right-handed 310
Helix 11	AB2	D	128	135	Right-handed 310
Helix 12	AB3	D	141	153	Right-handed alpha
Helix 13	AB4	D	182	184	Right-handed 310
Helix 14	AB5	D	185	200	Right-handed alpha
Helix 15	AB6	D	222	226	Right-handed 310
Helix 16	AB7	D	230	235	Right-handed alpha
Helix 17	AB8	C	239	246	Right-handed alpha
Helix 18	AB9	C	263	274	Right-handed alpha
Helix 19	AC1	C	338	347	Right-handed alpha
Helix 20	AC2	C	354	358	Right-handed 310
Helix 21	AC3	F	128	135	Right-handed 310
Helix 22	AC4	F	141	153	Right-handed alpha
Helix 23	AC5	F	182	184	Right-handed 310
Helix 24	AC6	F	185	200	Right-handed alpha
Helix 25	AC7	F	222	226	Right-handed 310
Helix 26	AC8	F	230	235	Right-handed alpha
Helix 27	AC9	E	239	246	Right-handed alpha
Helix 28	AD1	E	263	274	Right-handed alpha
Helix 29	AD2	E	338	348	Right-handed alpha
Helix 30	AD3	E	354	358	Right-handed 310
Helix 31	AD4	H	128	135	Right-handed 310
Helix 32	AD5	H	141	153	Right-handed alpha
Helix 33	AD6	H	185	200	Right-handed alpha
Helix 34	AD7	H	222	226	Right-handed 310
Helix 35	AD8	H	230	235	Right-handed alpha
Helix 36	AD9	G	239	246	Right-handed alpha
Helix 37	AE1	G	263	274	Right-handed alpha
Helix 38	AE2	G	338	347	Right-handed alpha
Helix 39	AE3	G	354	358	Right-handed 310

There are 15 sheets in PDB entry 6S9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	98	103	anti-parallel
Strand 3	B	106	113	anti-parallel
Strand 4	B	214	219	anti-parallel
Strand 5	B	175	178	anti-parallel
Strand 6	B	162	164	anti-parallel
Strand 7	B	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	226	230	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	334	337	anti-parallel
Strand 3	A	278	282	parallel
Strand 4	A	254	258	parallel
Strand 5	A	232	234	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	A	364	366	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	93	first strand
Strand 2	D	98	103	anti-parallel
Strand 3	D	106	113	anti-parallel
Strand 4	D	214	219	anti-parallel
Strand 5	D	175	178	anti-parallel
Strand 6	D	162	164	anti-parallel
Strand 7	D	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	214	first strand
Strand 2	C	199	203	anti-parallel
Strand 3	C	372	377	anti-parallel
Strand 4	C	226	230	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	334	337	anti-parallel
Strand 3	C	278	282	parallel
Strand 4	C	254	258	parallel
Strand 5	C	232	234	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	352	first strand
Strand 2	C	364	366	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	93	first strand
Strand 2	F	99	103	anti-parallel
Strand 3	F	106	113	anti-parallel
Strand 4	F	214	219	anti-parallel
Strand 5	F	175	178	anti-parallel
Strand 6	F	162	164	anti-parallel
Strand 7	F	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	214	first strand
Strand 2	E	199	203	anti-parallel
Strand 3	E	372	377	anti-parallel
Strand 4	E	226	234	anti-parallel
Strand 5	E	253	258	parallel
Strand 6	E	278	282	parallel
Strand 7	E	334	336	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	350	352	first strand
Strand 2	E	364	366	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	93	first strand
Strand 2	H	98	103	anti-parallel
Strand 3	H	106	113	anti-parallel
Strand 4	H	214	219	anti-parallel
Strand 5	H	175	178	anti-parallel
Strand 6	H	162	164	anti-parallel
Strand 7	H	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	214	first strand
Strand 2	G	199	203	anti-parallel
Strand 3	G	372	377	anti-parallel
Strand 4	G	226	230	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	232	234	first strand
Strand 2	G	254	258	parallel
Strand 3	G	278	282	parallel
Strand 4	G	334	336	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	350	352	first strand
Strand 2	G	364	366	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9J