Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S9S entry

There are 2 chains in PDB entry 6S9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 SER 38ALA 194
A
 GLN 30CYS 197
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6S9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
38 50Right-handed alpha
Helix 2
AA2
F
52 62Right-handed alpha
Helix 3
AA3
F
75 83Right-handed alpha
Helix 4
AA4
F
85 95Right-handed alpha
Helix 5
AA5
F
108 117Right-handed alpha
Helix 6
AA6
F
118 128Right-handed alpha
Helix 7
AA7
F
141 150Right-handed alpha
Helix 8
AA8
F
151 161Right-handed alpha
Helix 9
AA9
F
174 182Right-handed alpha
Helix 10
AB1
F
184 192Right-handed alpha
Helix 11
AB2
A
31 42Right-handed alpha
Helix 12
AB3
A
43 45Right-handed 310
Helix 13
AB4
A
50 61Right-handed alpha
Helix 14
AB5
A
87 96Right-handed alpha
Helix 15
AB6
A
173 180Right-handed alpha
Helix 16
AB7
A
183 191Right-handed alpha
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There are 2 sheets in PDB entry 6S9S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
158 171parallel
Strand 4
A
138 151anti-parallel
Strand 5
A
118 132anti-parallel
Strand 6
A
100 108anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
158 171parallel
Strand 4
A
138 151anti-parallel
Strand 5
A
118 132anti-parallel
Strand 6
A
111 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il