Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S9T entry

There are 2 chains in PDB entry 6S9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 30ARG 196
D
 SER 219ASN 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6S9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 43Right-handed alpha
Helix 2
AA2
A
50 61Right-handed alpha
Helix 3
AA3
A
87 98Right-handed alpha
Helix 4
AA4
A
173 180Right-handed alpha
Helix 5
AA5
A
183 192Right-handed alpha
Helix 6
AA6
D
220 232Right-handed alpha
Helix 7
AA7
D
233 243Right-handed alpha
Helix 8
AA8
D
256 264Right-handed alpha
Helix 9
AA9
D
266 276Right-handed alpha
Helix 10
AB1
D
289 297Right-handed alpha
Helix 11
AB2
D
299 309Right-handed alpha
Helix 12
AB3
D
322 330Right-handed alpha
Helix 13
AB4
D
332 345Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6S9T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
158 171parallel
Strand 4
A
139 151anti-parallel
Strand 5
A
118 132anti-parallel
Strand 6
A
100 107anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
158 171parallel
Strand 4
A
139 151anti-parallel
Strand 5
A
118 132anti-parallel
Strand 6
A
111 114anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il