Analysis of interatomic Contacts of Structural Units in PDB entry:
6S9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S9U entry

There is 1 chain in PDB entry 6S9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5LEU 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6S9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed alpha
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
36 40Right-handed 310
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
74 84Right-handed alpha
Helix 6
AA6
A
101 111Right-handed alpha
Helix 7
AA7
A
112 114Right-handed 310
Helix 8
AA8
A
122 127Right-handed alpha
Helix 9
AA9
A
142 149Right-handed alpha
Helix 10
AB1
A
198 215Right-handed alpha
Helix 11
AB2
A
224 228Right-handed 310
Helix 12
AB3
A
241 257Right-handed alpha
Helix 13
AB4
A
268 271Right-handed 310
Helix 14
AB5
A
272 280Right-handed alpha
Helix 15
AB6
A
288 300Right-handed alpha
Helix 16
AB7
A
302 315Right-handed alpha
Helix 17
AB8
A
332 335Right-handed 310
Helix 18
AB9
A
345 359Right-handed alpha
Helix 19
AC1
A
382 387Right-handed alpha
Helix 20
AC2
A
390 404Right-handed alpha
Helix 21
AC3
A
412 416Right-handed alpha
Helix 22
AC4
A
421 427Right-handed alpha
Helix 23
AC5
A
431 438Right-handed 310
Helix 24
AC6
A
442 450Right-handed alpha
Helix 25
AC7
A
452 468Right-handed alpha
Helix 26
AC8
A
469 473Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 6S9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
217 222parallel
Strand 3
A
87 92parallel
Strand 4
A
45 48parallel
Strand 5
A
15 18parallel
Strand 6
A
407 411parallel
Strand 7
A
319 322parallel
Strand 8
A
284 285parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
185 193anti-parallel
Strand 3
A
177 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
139 141anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
168 172anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
373 380anti-parallel
Strand 3
A
362 367anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 478first strand
Strand 2
A
484 491anti-parallel
Strand 3
A
494 501anti-parallel
Strand 4
A
506 513anti-parallel
Strand 5
A
516 521anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il