Analysis of interatomic Contacts of Structural Units in PDB entry:
6SAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SAV entry

There are 3 chains in PDB entry 6SAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 438
B
 ALA 1SER 119
B
 GLY 121ALA 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6SAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
15 20Right-handed alpha
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
46 52Right-handed alpha
Helix 5
AA5
A
88 102Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
143 150Right-handed alpha
Helix 8
AA8
A
151 155Right-handed 310
Helix 9
AA9
A
163 182Right-handed alpha
Helix 10
AB1
A
190 194Right-handed 310
Helix 11
AB2
A
195 196Right-handed 310
Helix 12
AB3
A
197 207Right-handed alpha
Helix 13
AB4
A
218 223Right-handed alpha
Helix 14
AB5
A
224 228Right-handed 310
Helix 15
AB6
A
234 246Right-handed alpha
Helix 16
AB7
A
252 266Right-handed alpha
Helix 17
AB8
A
268 271Right-handed 310
Helix 18
AB9
A
283 288Right-handed alpha
Helix 19
AC1
A
290 304Right-handed alpha
Helix 20
AC2
A
313 317Right-handed 310
Helix 21
AC3
A
329 334Right-handed 310
Helix 22
AC4
A
339 355Right-handed alpha
Helix 23
AC5
B
2 7Right-handed alpha
Helix 24
AC6
B
15 20Right-handed alpha
Helix 25
AC7
B
39 45Right-handed alpha
Helix 26
AC8
B
46 52Right-handed alpha
Helix 27
AC9
B
88 102Right-handed alpha
Helix 28
AD1
B
129 133Right-handed 310
Helix 29
AD2
B
143 150Right-handed alpha
Helix 30
AD3
B
151 155Right-handed 310
Helix 31
AD4
B
163 182Right-handed alpha
Helix 32
AD5
B
190 194Right-handed 310
Helix 33
AD6
B
195 207Right-handed alpha
Helix 34
AD7
B
218 223Right-handed alpha
Helix 35
AD8
B
224 228Right-handed 310
Helix 36
AD9
B
234 246Right-handed alpha
Helix 37
AE1
B
252 266Right-handed alpha
Helix 38
AE2
B
268 271Right-handed 310
Helix 39
AE3
B
283 288Right-handed alpha
Helix 40
AE4
B
290 304Right-handed alpha
Helix 41
AE5
B
313 317Right-handed 310
Helix 42
AE6
B
329 334Right-handed 310
Helix 43
AE7
B
339 353Right-handed alpha
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There are 6 sheets in PDB entry 6SAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
209 212parallel
Strand 3
A
185 188parallel
Strand 4
A
105 110parallel
Strand 5
A
57 60parallel
Strand 6
A
11 13parallel
Strand 7
A
307 311parallel
Strand 8
A
273 274parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 365first strand
Strand 2
A
369 374anti-parallel
Strand 3
A
377 382anti-parallel
Strand 4
A
433 437anti-parallel
Strand 5
A
405 408anti-parallel
Strand 6
A
414 416anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 395first strand
Strand 2
A
422 426anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
209 212parallel
Strand 3
B
185 188parallel
Strand 4
B
105 110parallel
Strand 5
B
57 60parallel
Strand 6
B
11 13parallel
Strand 7
B
307 311parallel
Strand 8
B
273 274parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 365first strand
Strand 2
B
369 374anti-parallel
Strand 3
B
377 382anti-parallel
Strand 4
B
433 437anti-parallel
Strand 5
B
405 408anti-parallel
Strand 6
B
414 416anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 395first strand
Strand 2
B
422 426anti-parallel
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