Analysis of interatomic Contacts of Structural Units in PDB entry:
6SB4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SB4 entry

There are 7 chains in PDB entry 6SB4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 377	THR 581
B	PHE 376	THR 581
C	PHE 376	PHE 580
D	PHE 376	PHE 580
E	PHE 376	PHE 580
F	PHE 376	THR 581
G	THR 377	GLU 505

There are 25 helices in PDB entry 6SB4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	393	398	Right-handed alpha
Helix 2	AA2	A	514	519	Right-handed alpha
Helix 3	AA3	A	520	522	Right-handed 310
Helix 4	AA4	B	393	398	Right-handed alpha
Helix 5	AA5	B	514	519	Right-handed alpha
Helix 6	AA6	B	520	522	Right-handed 310
Helix 7	AA7	C	393	398	Right-handed alpha
Helix 8	AA8	C	514	519	Right-handed alpha
Helix 9	AA9	C	520	522	Right-handed 310
Helix 10	AB1	D	393	398	Right-handed alpha
Helix 11	AB2	D	514	519	Right-handed alpha
Helix 12	AB3	D	520	522	Right-handed 310
Helix 13	AB4	E	393	398	Right-handed alpha
Helix 14	AB5	E	514	519	Right-handed alpha
Helix 15	AB6	E	520	522	Right-handed 310
Helix 16	AB7	F	393	398	Right-handed alpha
Helix 17	AB8	F	514	519	Right-handed alpha
Helix 18	AB9	F	520	522	Right-handed 310
Helix 19	AC1	G	393	398	Right-handed alpha
Helix 20	AC2	G	514	519	Right-handed alpha
Helix 21	AC3	G	520	522	Right-handed 310
Helix 22	AC4	H	393	398	Right-handed alpha
Helix 23	AC5	H	514	519	Right-handed alpha
Helix 24	AC6	H	520	522	Right-handed 310
Helix 25	AC7	H	578	581	Right-handed 310

There are 24 sheets in PDB entry 6SB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	387	first strand
Strand 2	A	441	464	anti-parallel
Strand 3	A	413	437	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	480	first strand
Strand 2	A	507	512	anti-parallel
Strand 3	A	499	503	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	530	first strand
Strand 2	A	569	576	anti-parallel
Strand 3	A	558	566	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	389	first strand
Strand 2	B	442	464	anti-parallel
Strand 3	B	413	436	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	480	first strand
Strand 2	B	507	512	anti-parallel
Strand 3	B	499	503	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	530	first strand
Strand 2	B	569	576	anti-parallel
Strand 3	B	558	566	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	387	first strand
Strand 2	C	441	464	anti-parallel
Strand 3	C	413	437	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	480	first strand
Strand 2	C	507	512	anti-parallel
Strand 3	C	499	503	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	530	first strand
Strand 2	C	569	576	anti-parallel
Strand 3	C	558	566	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	387	first strand
Strand 2	D	443	464	anti-parallel
Strand 3	D	413	435	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	480	first strand
Strand 2	D	507	512	anti-parallel
Strand 3	D	499	503	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	530	first strand
Strand 2	D	569	576	anti-parallel
Strand 3	D	558	566	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	387	first strand
Strand 2	E	441	463	anti-parallel
Strand 3	E	414	437	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	475	480	first strand
Strand 2	E	507	512	anti-parallel
Strand 3	E	499	503	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	525	530	first strand
Strand 2	E	569	576	anti-parallel
Strand 3	E	558	566	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	378	387	first strand
Strand 2	F	441	464	anti-parallel
Strand 3	F	413	437	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	475	480	first strand
Strand 2	F	507	512	anti-parallel
Strand 3	F	499	503	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	525	530	first strand
Strand 2	F	569	576	anti-parallel
Strand 3	F	558	566	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	378	387	first strand
Strand 2	G	441	464	anti-parallel
Strand 3	G	413	437	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	475	480	first strand
Strand 2	G	507	512	anti-parallel
Strand 3	G	499	503	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	525	530	first strand
Strand 2	G	569	576	anti-parallel
Strand 3	G	558	566	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	378	387	first strand
Strand 2	H	441	464	anti-parallel
Strand 3	H	413	437	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	475	480	first strand
Strand 2	H	507	512	anti-parallel
Strand 3	H	499	503	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	525	530	first strand
Strand 2	H	569	576	anti-parallel
Strand 3	H	558	566	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SB4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SB4