Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SBA entry

There are 3 chains in PDB entry 6SBA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 210LEU 359
A
 GLU 361GLU 427
B
 SER 8ALA 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6SBA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
261 267Right-handed 310
Helix 2
AA2
A
273 281Right-handed alpha
Helix 3
AA3
A
282 284Right-handed 310
Helix 4
AA4
A
298 303Right-handed alpha
Helix 5
AA5
A
360 372Right-handed alpha
Helix 6
AA6
A
375 385Right-handed alpha
Helix 7
AA7
B
9 27Right-handed alpha
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There are 3 sheets in PDB entry 6SBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
218 228anti-parallel
Strand 3
A
238 243anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
218 228anti-parallel
Strand 3
A
305 315anti-parallel
Strand 4
A
349 358anti-parallel
Strand 5
A
344 346anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
418 425parallel
Strand 3
A
286 293anti-parallel
Strand 4
A
400 410parallel
Strand 5
A
386 394anti-parallel
Strand 6
A
320 329anti-parallel
Strand 7
A
332 342anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il