Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SBB entry

There are 2 chains in PDB entry 6SBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20LEU 366
B
 PRO 18LEU 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6SBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 37Right-handed alpha
Helix 2
AA2
A
57 69Right-handed alpha
Helix 3
AA3
A
73 90Right-handed alpha
Helix 4
AA4
A
107 121Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
150 158Right-handed alpha
Helix 7
AA7
A
162 166Right-handed 310
Helix 8
AA8
A
175 183Right-handed alpha
Helix 9
AA9
A
185 199Right-handed alpha
Helix 10
AB1
A
213 229Right-handed alpha
Helix 11
AB2
A
230 232Right-handed 310
Helix 12
AB3
A
233 248Right-handed alpha
Helix 13
AB4
A
263 275Right-handed alpha
Helix 14
AB5
A
280 298Right-handed alpha
Helix 15
AB6
A
319 323Right-handed 310
Helix 16
AB7
A
330 332Right-handed 310
Helix 17
AB8
A
348 363Right-handed alpha
Helix 18
AB9
A
364 366Right-handed 310
Helix 19
AC1
B
19 37Right-handed alpha
Helix 20
AC2
B
57 69Right-handed alpha
Helix 21
AC3
B
73 90Right-handed alpha
Helix 22
AC4
B
107 121Right-handed alpha
Helix 23
AC5
B
126 139Right-handed alpha
Helix 24
AC6
B
150 156Right-handed alpha
Helix 25
AC7
B
175 183Right-handed alpha
Helix 26
AC8
B
185 199Right-handed alpha
Helix 27
AC9
B
213 229Right-handed alpha
Helix 28
AD1
B
230 232Right-handed 310
Helix 29
AD2
B
233 248Right-handed alpha
Helix 30
AD3
B
263 275Right-handed alpha
Helix 31
AD4
B
280 298Right-handed alpha
Helix 32
AD5
B
319 323Right-handed 310
Helix 33
AD6
B
330 332Right-handed 310
Helix 34
AD7
B
348 363Right-handed alpha
Helix 35
AD8
B
364 366Right-handed 310
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There are 4 sheets in PDB entry 6SBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
54 56anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
341 343anti-parallel
Strand 3
A
327 328parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
54 56anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
341 343anti-parallel
Strand 3
B
327 328parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il