Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SBI entry

There are 4 chains in PDB entry 6SBI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	SER 225
B	THR 10	SER 225
C	PRO 12	SER 225
D	THR 10	SER 225

There are 28 helices in PDB entry 6SBI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	19	Right-handed 310
Helix 2	AA2	A	30	38	Right-handed alpha
Helix 3	AA3	A	92	95	Right-handed 310
Helix 4	AA4	A	109	118	Right-handed alpha
Helix 5	AA5	A	122	127	Right-handed alpha
Helix 6	AA6	A	166	168	Right-handed 310
Helix 7	AA7	A	171	183	Right-handed alpha
Helix 8	AA8	B	12	19	Right-handed 310
Helix 9	AA9	B	30	38	Right-handed alpha
Helix 10	AB1	B	92	95	Right-handed 310
Helix 11	AB2	B	109	118	Right-handed alpha
Helix 12	AB3	B	122	127	Right-handed alpha
Helix 13	AB4	B	166	168	Right-handed 310
Helix 14	AB5	B	171	183	Right-handed alpha
Helix 15	AB6	C	12	19	Right-handed 310
Helix 16	AB7	C	30	38	Right-handed alpha
Helix 17	AB8	C	92	95	Right-handed 310
Helix 18	AB9	C	109	118	Right-handed alpha
Helix 19	AC1	C	122	127	Right-handed alpha
Helix 20	AC2	C	166	168	Right-handed 310
Helix 21	AC3	C	171	183	Right-handed alpha
Helix 22	AC4	D	12	19	Right-handed 310
Helix 23	AC5	D	30	38	Right-handed alpha
Helix 24	AC6	D	92	95	Right-handed 310
Helix 25	AC7	D	109	118	Right-handed alpha
Helix 26	AC8	D	122	127	Right-handed alpha
Helix 27	AC9	D	166	168	Right-handed 310
Helix 28	AD1	D	171	183	Right-handed alpha

There are 16 sheets in PDB entry 6SBI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	22	27	anti-parallel
Strand 3	A	190	192	parallel
Strand 4	A	75	81	anti-parallel
Strand 5	A	97	104	anti-parallel
Strand 6	A	138	139	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	132	134	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	216	224	parallel
Strand 3	A	207	212	anti-parallel
Strand 4	A	150	155	anti-parallel
Strand 5	A	158	164	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	71	73	anti-parallel
Strand 3	A	200	201	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	22	27	anti-parallel
Strand 3	B	190	192	parallel
Strand 4	B	75	81	anti-parallel
Strand 5	B	97	104	anti-parallel
Strand 6	B	138	139	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	132	134	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	216	224	parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	150	155	anti-parallel
Strand 5	B	158	164	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	200	201	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	51	first strand
Strand 2	C	22	27	anti-parallel
Strand 3	C	190	192	parallel
Strand 4	C	75	81	anti-parallel
Strand 5	C	97	104	anti-parallel
Strand 6	C	138	139	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	132	134	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	216	224	parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	150	155	anti-parallel
Strand 5	C	158	164	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	71	73	anti-parallel
Strand 3	C	200	201	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	51	first strand
Strand 2	D	22	27	anti-parallel
Strand 3	D	190	192	parallel
Strand 4	D	75	81	anti-parallel
Strand 5	D	97	104	anti-parallel
Strand 6	D	138	139	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	132	134	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	216	224	parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	150	155	anti-parallel
Strand 5	D	158	164	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	71	73	anti-parallel
Strand 3	D	200	201	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SBI

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBI