Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SBJ entry

There are 4 chains in PDB entry 6SBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	SER 225
B	CYS 5	SER 225
C	PRO 12	SER 225
D	LYS 11	SER 225

There are 36 helices in PDB entry 6SBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	14	Right-handed 310
Helix 2	AA2	A	15	20	Right-handed alpha
Helix 3	AA3	A	51	53	Right-handed 310
Helix 4	AA4	A	92	95	Right-handed 310
Helix 5	AA5	A	109	119	Right-handed alpha
Helix 6	AA6	A	122	127	Right-handed alpha
Helix 7	AA7	A	141	143	Right-handed 310
Helix 8	AA8	A	166	168	Right-handed 310
Helix 9	AA9	A	171	183	Right-handed alpha
Helix 10	AB1	B	12	14	Right-handed 310
Helix 11	AB2	B	15	20	Right-handed alpha
Helix 12	AB3	B	51	53	Right-handed 310
Helix 13	AB4	B	92	95	Right-handed 310
Helix 14	AB5	B	109	119	Right-handed alpha
Helix 15	AB6	B	122	127	Right-handed alpha
Helix 16	AB7	B	141	143	Right-handed 310
Helix 17	AB8	B	166	168	Right-handed 310
Helix 18	AB9	B	171	183	Right-handed alpha
Helix 19	AC1	C	12	14	Right-handed 310
Helix 20	AC2	C	15	20	Right-handed alpha
Helix 21	AC3	C	51	53	Right-handed 310
Helix 22	AC4	C	92	95	Right-handed 310
Helix 23	AC5	C	109	119	Right-handed alpha
Helix 24	AC6	C	122	127	Right-handed alpha
Helix 25	AC7	C	141	143	Right-handed 310
Helix 26	AC8	C	166	168	Right-handed 310
Helix 27	AC9	C	171	183	Right-handed alpha
Helix 28	AD1	D	12	14	Right-handed 310
Helix 29	AD2	D	15	20	Right-handed alpha
Helix 30	AD3	D	51	53	Right-handed 310
Helix 31	AD4	D	92	95	Right-handed 310
Helix 32	AD5	D	109	119	Right-handed alpha
Helix 33	AD6	D	122	127	Right-handed alpha
Helix 34	AD7	D	141	143	Right-handed 310
Helix 35	AD8	D	166	168	Right-handed 310
Helix 36	AD9	D	171	183	Right-handed alpha

There are 16 sheets in PDB entry 6SBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	23	26	anti-parallel
Strand 3	A	190	192	parallel
Strand 4	A	75	81	anti-parallel
Strand 5	A	97	104	anti-parallel
Strand 6	A	138	139	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	132	134	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	216	224	parallel
Strand 3	A	207	212	anti-parallel
Strand 4	A	150	155	anti-parallel
Strand 5	A	158	164	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	71	73	anti-parallel
Strand 3	A	200	201	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	23	26	anti-parallel
Strand 3	B	190	192	parallel
Strand 4	B	75	81	anti-parallel
Strand 5	B	97	104	anti-parallel
Strand 6	B	138	139	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	132	134	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	216	224	parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	150	155	anti-parallel
Strand 5	B	158	164	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	71	73	anti-parallel
Strand 3	B	200	202	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	23	26	anti-parallel
Strand 3	C	190	192	parallel
Strand 4	C	75	81	anti-parallel
Strand 5	C	97	104	anti-parallel
Strand 6	C	138	139	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	57	first strand
Strand 2	C	132	134	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	216	224	parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	150	155	anti-parallel
Strand 5	C	158	164	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	71	73	anti-parallel
Strand 3	C	200	201	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	23	26	anti-parallel
Strand 3	D	190	192	parallel
Strand 4	D	75	81	anti-parallel
Strand 5	D	97	104	anti-parallel
Strand 6	D	138	139	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	132	134	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	216	224	parallel
Strand 3	D	207	212	anti-parallel
Strand 4	D	150	155	anti-parallel
Strand 5	D	158	164	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	71	73	anti-parallel
Strand 3	D	200	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBJ