Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SBV entry

There are 8 chains in PDB entry 6SBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	PHE 332
B	ALA 2	PHE 332
C	ALA 2	PHE 332
D	ALA 2	PHE 332
E	ALA 2	PHE 332
F	ALA 2	PHE 332
G	ALA 2	PHE 332
H	ALA 2	PHE 332

There are119 helices in PDB entry 6SBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	29	42	Right-handed alpha
Helix 3	AA3	A	54	69	Right-handed alpha
Helix 4	AA4	A	70	72	Right-handed 310
Helix 5	AA5	A	82	87	Right-handed 310
Helix 6	AA6	A	105	128	Right-handed alpha
Helix 7	AA7	A	139	152	Right-handed alpha
Helix 8	AA8	A	154	156	Right-handed 310
Helix 9	AA9	A	163	179	Right-handed alpha
Helix 10	AB1	A	181	185	Right-handed 310
Helix 11	AB2	A	200	203	Right-handed 310
Helix 12	AB3	A	211	215	Right-handed alpha
Helix 13	AB4	A	227	246	Right-handed alpha
Helix 14	AB5	A	249	265	Right-handed alpha
Helix 15	AB6	A	309	328	Right-handed alpha
Helix 16	AB7	B	3	8	Right-handed alpha
Helix 17	AB8	B	29	42	Right-handed alpha
Helix 18	AB9	B	54	69	Right-handed alpha
Helix 19	AC1	B	70	72	Right-handed 310
Helix 20	AC2	B	82	87	Right-handed 310
Helix 21	AC3	B	105	128	Right-handed alpha
Helix 22	AC4	B	139	152	Right-handed alpha
Helix 23	AC5	B	154	156	Right-handed 310
Helix 24	AC6	B	163	179	Right-handed alpha
Helix 25	AC7	B	181	185	Right-handed 310
Helix 26	AC8	B	201	203	Right-handed 310
Helix 27	AC9	B	211	215	Right-handed alpha
Helix 28	AD1	B	227	246	Right-handed alpha
Helix 29	AD2	B	249	265	Right-handed alpha
Helix 30	AD3	B	309	328	Right-handed alpha
Helix 31	AD4	C	3	8	Right-handed alpha
Helix 32	AD5	C	29	42	Right-handed alpha
Helix 33	AD6	C	54	69	Right-handed alpha
Helix 34	AD7	C	70	72	Right-handed 310
Helix 35	AD8	C	82	87	Right-handed 310
Helix 36	AD9	C	105	128	Right-handed alpha
Helix 37	AE1	C	139	152	Right-handed alpha
Helix 38	AE2	C	154	156	Right-handed 310
Helix 39	AE3	C	163	179	Right-handed alpha
Helix 40	AE4	C	181	185	Right-handed 310
Helix 41	AE5	C	201	203	Right-handed 310
Helix 42	AE6	C	211	215	Right-handed alpha
Helix 43	AE7	C	227	246	Right-handed alpha
Helix 44	AE8	C	249	265	Right-handed alpha
Helix 45	AE9	C	309	328	Right-handed alpha
Helix 46	AF1	D	3	8	Right-handed alpha
Helix 47	AF2	D	29	42	Right-handed alpha
Helix 48	AF3	D	54	69	Right-handed alpha
Helix 49	AF4	D	70	72	Right-handed 310
Helix 50	AF5	D	82	87	Right-handed 310
Helix 51	AF6	D	105	128	Right-handed alpha
Helix 52	AF7	D	139	152	Right-handed alpha
Helix 53	AF8	D	154	156	Right-handed 310
Helix 54	AF9	D	163	179	Right-handed alpha
Helix 55	AG1	D	181	185	Right-handed 310
Helix 56	AG2	D	201	203	Right-handed 310
Helix 57	AG3	D	211	215	Right-handed alpha
Helix 58	AG4	D	227	246	Right-handed alpha
Helix 59	AG5	D	249	265	Right-handed alpha
Helix 60	AG6	D	309	328	Right-handed alpha
Helix 61	AG7	E	3	8	Right-handed alpha
Helix 62	AG8	E	29	42	Right-handed alpha
Helix 63	AG9	E	54	69	Right-handed alpha
Helix 64	AH1	E	70	72	Right-handed 310
Helix 65	AH2	E	82	87	Right-handed 310
Helix 66	AH3	E	105	128	Right-handed alpha
Helix 67	AH4	E	139	152	Right-handed alpha
Helix 68	AH5	E	154	156	Right-handed 310
Helix 69	AH6	E	163	179	Right-handed alpha
Helix 70	AH7	E	181	185	Right-handed 310
Helix 71	AH8	E	200	203	Right-handed 310
Helix 72	AH9	E	211	215	Right-handed alpha
Helix 73	AI1	E	227	246	Right-handed alpha
Helix 74	AI2	E	249	265	Right-handed alpha
Helix 75	AI3	E	309	328	Right-handed alpha
Helix 76	AI4	F	3	8	Right-handed alpha
Helix 77	AI5	F	29	42	Right-handed alpha
Helix 78	AI6	F	54	69	Right-handed alpha
Helix 79	AI7	F	70	72	Right-handed 310
Helix 80	AI8	F	82	87	Right-handed 310
Helix 81	AI9	F	105	128	Right-handed alpha
Helix 82	AJ1	F	139	152	Right-handed alpha
Helix 83	AJ2	F	154	156	Right-handed 310
Helix 84	AJ3	F	163	179	Right-handed alpha
Helix 85	AJ4	F	181	185	Right-handed 310
Helix 86	AJ5	F	211	215	Right-handed alpha
Helix 87	AJ6	F	227	246	Right-handed alpha
Helix 88	AJ7	F	249	265	Right-handed alpha
Helix 89	AJ8	F	309	328	Right-handed alpha
Helix 90	AJ9	G	3	8	Right-handed alpha
Helix 91	AK1	G	29	42	Right-handed alpha
Helix 92	AK2	G	54	69	Right-handed alpha
Helix 93	AK3	G	70	72	Right-handed 310
Helix 94	AK4	G	82	87	Right-handed 310
Helix 95	AK5	G	105	128	Right-handed alpha
Helix 96	AK6	G	139	152	Right-handed alpha
Helix 97	AK7	G	154	156	Right-handed 310
Helix 98	AK8	G	163	179	Right-handed alpha
Helix 99	AK9	G	181	185	Right-handed 310
Helix 100	AL1	G	200	203	Right-handed 310
Helix 101	AL2	G	211	215	Right-handed alpha
Helix 102	AL3	G	227	246	Right-handed alpha
Helix 103	AL4	G	249	265	Right-handed alpha
Helix 104	AL5	G	309	328	Right-handed alpha
Helix 105	AL6	H	3	8	Right-handed alpha
Helix 106	AL7	H	29	42	Right-handed alpha
Helix 107	AL8	H	54	69	Right-handed alpha
Helix 108	AL9	H	70	72	Right-handed 310
Helix 109	AM1	H	82	87	Right-handed 310
Helix 110	AM2	H	105	128	Right-handed alpha
Helix 111	AM3	H	139	152	Right-handed alpha
Helix 112	AM4	H	154	156	Right-handed 310
Helix 113	AM5	H	163	179	Right-handed alpha
Helix 114	AM6	H	181	185	Right-handed 310
Helix 115	AM7	H	200	203	Right-handed 310
Helix 116	AM8	H	211	215	Right-handed alpha
Helix 117	AM9	H	227	246	Right-handed alpha
Helix 118	AN1	H	249	265	Right-handed alpha
Helix 119	AN2	H	309	328	Right-handed alpha

There are 27 sheets in PDB entry 6SBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	D	299	304	anti-parallel
Strand 3	D	288	296	anti-parallel
Strand 4	D	269	276	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	47	51	parallel
Strand 3	A	22	26	parallel
Strand 4	A	91	94	parallel
Strand 5	A	132	135	parallel
Strand 6	A	158	160	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	209	210	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	276	first strand
Strand 2	A	288	296	anti-parallel
Strand 3	A	299	304	anti-parallel
Strand 4	D	9	11	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	288	296	anti-parallel
Strand 4	C	269	276	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	47	51	parallel
Strand 3	B	22	26	parallel
Strand 4	B	91	94	parallel
Strand 5	B	132	135	parallel
Strand 6	B	158	160	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	190	first strand
Strand 2	B	198	199	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	209	210	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	276	first strand
Strand 2	B	288	296	anti-parallel
Strand 3	B	299	304	anti-parallel
Strand 4	C	9	11	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	79	first strand
Strand 2	C	47	51	parallel
Strand 3	C	22	26	parallel
Strand 4	C	91	94	parallel
Strand 5	C	132	135	parallel
Strand 6	C	158	160	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	190	first strand
Strand 2	C	198	199	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	206	first strand
Strand 2	C	209	210	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	47	51	parallel
Strand 3	D	22	26	parallel
Strand 4	D	91	94	parallel
Strand 5	D	132	135	parallel
Strand 6	D	158	160	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	190	first strand
Strand 2	D	198	199	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	209	210	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	11	first strand
Strand 2	H	299	304	anti-parallel
Strand 3	H	288	296	anti-parallel
Strand 4	H	269	276	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	79	first strand
Strand 2	E	47	51	parallel
Strand 3	E	22	26	parallel
Strand 4	E	91	94	parallel
Strand 5	E	132	135	parallel
Strand 6	E	158	160	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	205	206	first strand
Strand 2	E	209	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	269	276	first strand
Strand 2	E	288	296	anti-parallel
Strand 3	E	299	304	anti-parallel
Strand 4	H	9	11	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	11	first strand
Strand 2	G	299	304	anti-parallel
Strand 3	G	288	296	anti-parallel
Strand 4	G	269	276	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	79	first strand
Strand 2	F	47	51	parallel
Strand 3	F	22	26	parallel
Strand 4	F	91	94	parallel
Strand 5	F	132	135	parallel
Strand 6	F	158	160	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	190	first strand
Strand 2	F	198	206	anti-parallel
Strand 3	F	209	210	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	276	first strand
Strand 2	F	288	296	anti-parallel
Strand 3	F	299	304	anti-parallel
Strand 4	G	9	11	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	79	first strand
Strand 2	G	47	51	parallel
Strand 3	G	22	26	parallel
Strand 4	G	91	94	parallel
Strand 5	G	132	135	parallel
Strand 6	G	158	160	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	205	206	first strand
Strand 2	G	209	210	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	76	79	first strand
Strand 2	H	47	51	parallel
Strand 3	H	22	26	parallel
Strand 4	H	91	94	parallel
Strand 5	H	132	135	parallel
Strand 6	H	158	160	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	205	206	first strand
Strand 2	H	209	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SBV