Analysis of interatomic Contacts of Structural Units in PDB entry:
6SC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SC6 entry

There are 3 chains in PDB entry 6SC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 697ARG 1070
B
 GLU 1SER 119
C
 GLU 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6SC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
707 711Right-handed 310
Helix 2
AA2
A
722 737Right-handed alpha
Helix 3
AA3
A
738 742Right-handed 310
Helix 4
AA4
A
757 773Right-handed alpha
Helix 5
AA5
A
774 789Right-handed alpha
Helix 6
AA6
A
833 837Right-handed 310
Helix 7
AA7
A
840 850Right-handed alpha
Helix 8
AA8
A
852 858Right-handed alpha
Helix 9
AA9
A
859 867Right-handed alpha
Helix 10
AB1
A
930 935Right-handed alpha
Helix 11
AB2
A
938 948Right-handed alpha
Helix 12
AB3
A
998 1013Right-handed alpha
Helix 13
AB4
A
1016 1021Right-handed 310
Helix 14
AB5
A
1022 1034Right-handed alpha
Helix 15
AB6
A
1045 1061Right-handed alpha
Helix 16
AB7
B
28 32Right-handed 310
Helix 17
AB8
B
87 91Right-handed 310
Helix 18
AB9
C
28 32Right-handed 310
Helix 19
AC1
C
62 65Right-handed 310
Helix 20
AC2
C
87 91Right-handed 310
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There are 10 sheets in PDB entry 6SC6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 798first strand
Strand 2
A
805 807anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
814 816first strand
Strand 2
A
823 825anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 889first strand
Strand 2
A
896 898anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
972 977first strand
Strand 2
A
980 985anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
92 98anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
46 51anti-parallel
Strand 5
B
58 60anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
107 110anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 116first strand
Strand 2
C
92 98anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
46 51anti-parallel
Strand 5
C
58 60anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 99first strand
Strand 2
C
107 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il