Analysis of interatomic Contacts of Structural Units in PDB entry:
6SCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SCD entry

There are 2 chains in PDB entry 6SCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40LEU 305
B
 SER 40LEU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6SCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 55Right-handed alpha
Helix 2
AA2
A
101 106Right-handed 310
Helix 3
AA3
A
107 114Right-handed alpha
Helix 4
AA4
A
130 149Right-handed alpha
Helix 5
AA5
A
171 182Right-handed alpha
Helix 6
AA6
A
201 205Right-handed 310
Helix 7
AA7
A
225 233Right-handed alpha
Helix 8
AA8
A
258 275Right-handed alpha
Helix 9
AA9
A
277 279Right-handed 310
Helix 10
AB1
A
280 285Right-handed alpha
Helix 11
AB2
A
288 292Right-handed 310
Helix 12
AB3
B
49 55Right-handed alpha
Helix 13
AB4
B
101 106Right-handed 310
Helix 14
AB5
B
107 114Right-handed alpha
Helix 15
AB6
B
130 150Right-handed alpha
Helix 16
AB7
B
171 182Right-handed alpha
Helix 17
AB8
B
199 204Right-handed alpha
Helix 18
AB9
B
225 233Right-handed alpha
Helix 19
AC1
B
258 276Right-handed alpha
Helix 20
AC2
B
277 279Right-handed 310
Helix 21
AC3
B
280 285Right-handed alpha
Helix 22
AC4
B
288 292Right-handed 310
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There are 4 sheets in PDB entry 6SCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
117 122anti-parallel
Strand 4
A
89 95parallel
Strand 5
A
160 170parallel
Strand 6
A
188 192parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 214first strand
Strand 2
A
239 244parallel
Strand 3
A
295 300anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 67first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
89 95parallel
Strand 5
B
160 170parallel
Strand 6
B
188 192parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 214first strand
Strand 2
B
239 244parallel
Strand 3
B
295 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il