Analysis of interatomic Contacts of Structural Units in PDB entry:
6SCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SCE entry

There are 2 chains in PDB entry 6SCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLU 638
B
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6SCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
43 60Right-handed alpha
Helix 3
AA3
A
68 73Right-handed 310
Helix 4
AA4
A
89 101Right-handed alpha
Helix 5
AA5
A
139 147Right-handed alpha
Helix 6
AA6
A
148 152Right-handed 310
Helix 7
AA7
A
198 202Right-handed 310
Helix 8
AA8
A
205 221Right-handed alpha
Helix 9
AA9
A
231 237Right-handed alpha
Helix 10
AB1
A
239 258Right-handed alpha
Helix 11
AB2
A
267 277Right-handed alpha
Helix 12
AB3
A
302 313Right-handed alpha
Helix 13
AB4
A
322 324Right-handed 310
Helix 14
AB5
A
325 339Right-handed alpha
Helix 15
AB6
A
353 371Right-handed alpha
Helix 16
AB7
A
383 394Right-handed alpha
Helix 17
AB8
A
419 423Right-handed 310
Helix 18
AB9
A
424 433Right-handed alpha
Helix 19
AC1
A
446 459Right-handed alpha
Helix 20
AC2
A
473 485Right-handed alpha
Helix 21
AC3
A
498 514Right-handed alpha
Helix 22
AC4
A
515 517Right-handed 310
Helix 23
AC5
A
561 579Right-handed alpha
Helix 24
AC6
A
622 628Right-handed alpha
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There are 4 sheets in PDB entry 6SCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
33 38parallel
Strand 3
A
5 10parallel
Strand 4
A
81 84parallel
Strand 5
A
105 111parallel
Strand 6
A
120 125anti-parallel
Strand 7
A
129 132anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
169 172anti-parallel
Strand 3
A
179 184anti-parallel
Strand 4
A
187 192anti-parallel
Strand 5
A
225 229parallel
Strand 6
A
260 262parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 347first strand
Strand 2
A
316 321parallel
Strand 3
A
293 297parallel
Strand 4
A
375 378parallel
Strand 5
A
399 404parallel
Strand 6
A
407 410anti-parallel
Strand 7
A
415 417anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 438first strand
Strand 2
A
519 528anti-parallel
Strand 3
A
541 548anti-parallel
Strand 4
A
551 560anti-parallel
Strand 5
A
584 592parallel
Strand 6
A
603 610parallel
Strand 7
A
617 618parallel
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