Analysis of interatomic Contacts of Structural Units in PDB entry:
6SCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SCI entry

There are 2 chains in PDB entry 6SCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 451GLU 869
B
 MET 451GLU 869
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 6SCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
465 477Right-handed alpha
Helix 2
AA2
A
488 493Right-handed alpha
Helix 3
AA3
A
496 506Right-handed alpha
Helix 4
AA4
A
521 536Right-handed alpha
Helix 5
AA5
A
545 561Right-handed alpha
Helix 6
AA6
A
565 573Right-handed alpha
Helix 7
AA7
A
602 606Right-handed 310
Helix 8
AA8
A
625 628Right-handed 310
Helix 9
AA9
A
635 639Right-handed 310
Helix 10
AB1
A
643 664Right-handed alpha
Helix 11
AB2
A
668 693Right-handed alpha
Helix 12
AB3
A
696 718Right-handed alpha
Helix 13
AB4
A
720 734Right-handed alpha
Helix 14
AB5
A
736 753Right-handed alpha
Helix 15
AB6
A
771 782Right-handed alpha
Helix 16
AB7
A
790 809Right-handed alpha
Helix 17
AB8
A
815 819Right-handed 310
Helix 18
AB9
A
821 839Right-handed alpha
Helix 19
AC1
A
840 845Right-handed 310
Helix 20
AC2
A
850 864Right-handed alpha
Helix 21
AC3
B
465 477Right-handed alpha
Helix 22
AC4
B
487 493Right-handed alpha
Helix 23
AC5
B
494 506Right-handed alpha
Helix 24
AC6
B
521 536Right-handed alpha
Helix 25
AC7
B
545 561Right-handed alpha
Helix 26
AC8
B
565 573Right-handed alpha
Helix 27
AC9
B
602 606Right-handed 310
Helix 28
AD1
B
625 628Right-handed 310
Helix 29
AD2
B
635 639Right-handed 310
Helix 30
AD3
B
643 664Right-handed alpha
Helix 31
AD4
B
671 693Right-handed alpha
Helix 32
AD5
B
696 718Right-handed alpha
Helix 33
AD6
B
720 734Right-handed alpha
Helix 34
AD7
B
736 753Right-handed alpha
Helix 35
AD8
B
771 782Right-handed alpha
Helix 36
AD9
B
790 809Right-handed alpha
Helix 37
AE1
B
815 819Right-handed 310
Helix 38
AE2
B
821 839Right-handed alpha
Helix 39
AE3
B
840 845Right-handed 310
Helix 40
AE4
B
850 864Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6SCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 455first strand
Strand 2
B
459 462anti-parallel
Strand 3
B
631 634parallel
Strand 4
B
591 596parallel
Strand 5
B
539 544parallel
Strand 6
B
481 485parallel
Strand 7
B
509 513parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 516first strand
Strand 2
A
481 487parallel
Strand 3
A
539 544parallel
Strand 4
A
591 596parallel
Strand 5
A
631 634parallel
Strand 6
A
459 462parallel
Strand 7
B
452 455anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 612first strand
Strand 2
A
619 623anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
608 612first strand
Strand 2
B
619 623anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il