Analysis of interatomic Contacts of Structural Units in PDB entry:
6SCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SCS entry

There are 8 chains in PDB entry 6SCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 67GLU 136
B
 VAL 70GLU 136
D
 MET 63GLU 136
E
 VAL 70PRO 135
P
 ASP 433GLN 442
Q
 ASP 434LEU 441
R
 ASP 434LEU 441
S
 LEU 435GLN 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6SCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 78Right-handed 310
Helix 2
AA2
A
79 89Right-handed alpha
Helix 3
AA3
A
101 120Right-handed alpha
Helix 4
AA4
B
76 78Right-handed 310
Helix 5
AA5
B
79 89Right-handed alpha
Helix 6
AA6
B
101 120Right-handed alpha
Helix 7
AA7
D
76 78Right-handed 310
Helix 8
AA8
D
79 89Right-handed alpha
Helix 9
AA9
D
101 119Right-handed alpha
Helix 10
AB1
E
76 78Right-handed 310
Helix 11
AB2
E
79 89Right-handed alpha
Helix 12
AB3
E
101 119Right-handed alpha
Helix 13
AB4
P
438 442Right-handed 310
Helix 14
AB5
S
438 442Right-handed 310
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There are 4 sheets in PDB entry 6SCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
93 96parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
122 127anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
93 96parallel
Strand 3
B
130 134anti-parallel
Strand 4
B
122 127anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
70 73first strand
Strand 2
D
93 96parallel
Strand 3
D
130 134anti-parallel
Strand 4
D
122 127anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
72 73first strand
Strand 2
E
93 96parallel
Strand 3
E
130 134anti-parallel
Strand 4
E
122 125anti-parallel
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