Analysis of interatomic Contacts of Structural Units in PDB entry:
6SCX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SCX entry

There are 3 chains in PDB entry 6SCX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 115	ASN 459
B	GLU 115	ASN 459
C	GLU 115	ASN 459

There are 36 helices in PDB entry 6SCX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	134	Right-handed 310
Helix 2	AA2	A	135	145	Right-handed alpha
Helix 3	AA3	A	180	189	Right-handed alpha
Helix 4	AA4	A	233	245	Right-handed alpha
Helix 5	AA5	A	252	257	Right-handed alpha
Helix 6	AA6	A	258	260	Right-handed 310
Helix 7	AA7	A	261	281	Right-handed alpha
Helix 8	AA8	A	307	311	Right-handed 310
Helix 9	AA9	A	314	318	Right-handed 310
Helix 10	AB1	A	362	376	Right-handed alpha
Helix 11	AB2	A	424	432	Right-handed alpha
Helix 12	AB3	A	446	459	Right-handed alpha
Helix 13	AB4	B	129	134	Right-handed 310
Helix 14	AB5	B	135	145	Right-handed alpha
Helix 15	AB6	B	180	189	Right-handed alpha
Helix 16	AB7	B	233	245	Right-handed alpha
Helix 17	AB8	B	252	257	Right-handed alpha
Helix 18	AB9	B	258	260	Right-handed 310
Helix 19	AC1	B	261	281	Right-handed alpha
Helix 20	AC2	B	307	311	Right-handed 310
Helix 21	AC3	B	314	318	Right-handed 310
Helix 22	AC4	B	362	376	Right-handed alpha
Helix 23	AC5	B	424	432	Right-handed alpha
Helix 24	AC6	B	446	459	Right-handed alpha
Helix 25	AC7	C	129	134	Right-handed 310
Helix 26	AC8	C	135	145	Right-handed alpha
Helix 27	AC9	C	180	189	Right-handed alpha
Helix 28	AD1	C	233	245	Right-handed alpha
Helix 29	AD2	C	252	257	Right-handed alpha
Helix 30	AD3	C	258	260	Right-handed 310
Helix 31	AD4	C	261	281	Right-handed alpha
Helix 32	AD5	C	307	311	Right-handed 310
Helix 33	AD6	C	314	318	Right-handed 310
Helix 34	AD7	C	362	376	Right-handed alpha
Helix 35	AD8	C	424	432	Right-handed alpha
Helix 36	AD9	C	446	459	Right-handed alpha

There are 15 sheets in PDB entry 6SCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	195	202	anti-parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	149	154	parallel
Strand 5	A	157	162	anti-parallel
Strand 6	A	174	176	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	195	202	anti-parallel
Strand 3	A	226	232	anti-parallel
Strand 4	A	149	154	parallel
Strand 5	A	157	162	anti-parallel
Strand 6	A	248	249	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	294	first strand
Strand 2	A	299	302	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	323	330	anti-parallel
Strand 3	A	396	404	parallel
Strand 4	A	379	389	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	356	first strand
Strand 2	A	323	330	anti-parallel
Strand 3	A	336	341	anti-parallel
Strand 4	A	418	423	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	195	202	anti-parallel
Strand 3	B	226	232	anti-parallel
Strand 4	B	149	154	parallel
Strand 5	B	157	162	anti-parallel
Strand 6	B	174	176	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	195	202	anti-parallel
Strand 3	B	226	232	anti-parallel
Strand 4	B	149	154	parallel
Strand 5	B	157	162	anti-parallel
Strand 6	B	248	249	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	294	first strand
Strand 2	B	299	302	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	356	first strand
Strand 2	B	323	330	anti-parallel
Strand 3	B	396	404	parallel
Strand 4	B	379	389	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	356	first strand
Strand 2	B	323	330	anti-parallel
Strand 3	B	336	341	anti-parallel
Strand 4	B	418	423	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	195	202	anti-parallel
Strand 3	C	226	232	anti-parallel
Strand 4	C	149	154	parallel
Strand 5	C	157	161	anti-parallel
Strand 6	C	175	176	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	195	202	anti-parallel
Strand 3	C	226	232	anti-parallel
Strand 4	C	149	154	parallel
Strand 5	C	157	161	anti-parallel
Strand 6	C	248	249	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	294	first strand
Strand 2	C	299	302	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	356	first strand
Strand 2	C	323	330	anti-parallel
Strand 3	C	396	404	parallel
Strand 4	C	379	389	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	356	first strand
Strand 2	C	323	330	anti-parallel
Strand 3	C	336	341	anti-parallel
Strand 4	C	418	423	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SCX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SCX