Analysis of interatomic Contacts of Structural Units in PDB entry:
6SD5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SD5 entry

There are 22 chains in PDB entry 6SD5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 125	GLN 222
C	GLN 125	GLN 222
D	GLN 125	GLN 222
F	GLN 125	GLN 222
G	GLN 125	GLN 222
I	GLN 125	GLN 222
J	GLN 125	GLN 222
L	GLN 125	GLN 222
M	GLN 125	GLN 222
O	GLN 125	GLN 222
P	GLN 125	GLN 222
R	GLN 125	GLN 222
T	GLN 125	GLN 222
U	GLN 125	GLN 222
W	GLN 125	GLN 222
X	GLN 125	GLN 222
Z	GLN 125	GLN 222
a	GLN 125	GLN 222
c	GLN 125	GLN 222
d	GLN 125	GLN 222
f	GLN 125	GLN 222
g	GLN 125	GLN 222

There are 66 helices in PDB entry 6SD5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	127	132	Right-handed alpha
Helix 2	AA2	A	132	146	Right-handed alpha
Helix 3	AA3	A	188	200	Right-handed alpha
Helix 4	AA4	C	127	132	Right-handed alpha
Helix 5	AA5	C	132	146	Right-handed alpha
Helix 6	AA6	C	188	200	Right-handed alpha
Helix 7	AA7	D	127	132	Right-handed alpha
Helix 8	AA8	D	132	146	Right-handed alpha
Helix 9	AA9	D	188	200	Right-handed alpha
Helix 10	AB1	F	127	132	Right-handed alpha
Helix 11	AB2	F	132	146	Right-handed alpha
Helix 12	AB3	F	188	200	Right-handed alpha
Helix 13	AB4	G	127	132	Right-handed alpha
Helix 14	AB5	G	132	146	Right-handed alpha
Helix 15	AB6	G	188	200	Right-handed alpha
Helix 16	AB7	I	127	132	Right-handed alpha
Helix 17	AB8	I	132	146	Right-handed alpha
Helix 18	AB9	I	188	200	Right-handed alpha
Helix 19	AC1	J	127	132	Right-handed alpha
Helix 20	AC2	J	132	146	Right-handed alpha
Helix 21	AC3	J	188	200	Right-handed alpha
Helix 22	AC4	L	127	132	Right-handed alpha
Helix 23	AC5	L	132	146	Right-handed alpha
Helix 24	AC6	L	188	200	Right-handed alpha
Helix 25	AC7	M	127	132	Right-handed alpha
Helix 26	AC8	M	132	146	Right-handed alpha
Helix 27	AC9	M	188	200	Right-handed alpha
Helix 28	AD1	O	127	132	Right-handed alpha
Helix 29	AD2	O	132	146	Right-handed alpha
Helix 30	AD3	O	188	200	Right-handed alpha
Helix 31	AD4	P	127	132	Right-handed alpha
Helix 32	AD5	P	132	146	Right-handed alpha
Helix 33	AD6	P	188	200	Right-handed alpha
Helix 34	AD7	R	127	132	Right-handed alpha
Helix 35	AD8	R	132	146	Right-handed alpha
Helix 36	AD9	R	188	200	Right-handed alpha
Helix 37	AE1	T	127	132	Right-handed alpha
Helix 38	AE2	T	132	146	Right-handed alpha
Helix 39	AE3	T	188	200	Right-handed alpha
Helix 40	AE4	U	127	132	Right-handed alpha
Helix 41	AE5	U	132	146	Right-handed alpha
Helix 42	AE6	U	188	200	Right-handed alpha
Helix 43	AE7	W	127	132	Right-handed alpha
Helix 44	AE8	W	132	146	Right-handed alpha
Helix 45	AE9	W	188	200	Right-handed alpha
Helix 46	AF1	X	127	132	Right-handed alpha
Helix 47	AF2	X	132	146	Right-handed alpha
Helix 48	AF3	X	188	200	Right-handed alpha
Helix 49	AF4	Z	127	132	Right-handed alpha
Helix 50	AF5	Z	132	146	Right-handed alpha
Helix 51	AF6	Z	188	200	Right-handed alpha
Helix 52	AF7	a	127	132	Right-handed alpha
Helix 53	AF8	a	132	146	Right-handed alpha
Helix 54	AF9	a	188	200	Right-handed alpha
Helix 55	AG1	c	127	132	Right-handed alpha
Helix 56	AG2	c	132	146	Right-handed alpha
Helix 57	AG3	c	188	200	Right-handed alpha
Helix 58	AG4	d	127	132	Right-handed alpha
Helix 59	AG5	d	132	146	Right-handed alpha
Helix 60	AG6	d	188	200	Right-handed alpha
Helix 61	AG7	f	127	132	Right-handed alpha
Helix 62	AG8	f	132	146	Right-handed alpha
Helix 63	AG9	f	188	200	Right-handed alpha
Helix 64	AH1	g	127	132	Right-handed alpha
Helix 65	AH2	g	132	146	Right-handed alpha
Helix 66	AH3	g	188	200	Right-handed alpha

There are 44 sheets in PDB entry 6SD5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	179	180	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	157	first strand
Strand 2	A	174	176	anti-parallel
Strand 3	A	210	212	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	152	first strand
Strand 2	C	179	180	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	157	first strand
Strand 2	C	174	176	anti-parallel
Strand 3	C	210	212	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	152	first strand
Strand 2	D	179	180	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	157	first strand
Strand 2	D	174	176	anti-parallel
Strand 3	D	210	212	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	179	180	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	156	157	first strand
Strand 2	F	174	176	anti-parallel
Strand 3	F	210	212	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	152	first strand
Strand 2	G	179	180	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	157	first strand
Strand 2	G	174	176	anti-parallel
Strand 3	G	210	212	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	150	152	first strand
Strand 2	I	179	180	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	157	first strand
Strand 2	I	174	176	anti-parallel
Strand 3	I	210	212	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	150	152	first strand
Strand 2	J	179	180	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	157	first strand
Strand 2	J	174	176	anti-parallel
Strand 3	J	210	212	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	150	152	first strand
Strand 2	L	179	180	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	157	first strand
Strand 2	L	174	176	anti-parallel
Strand 3	L	210	212	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	150	152	first strand
Strand 2	M	179	180	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	156	157	first strand
Strand 2	M	174	176	anti-parallel
Strand 3	M	210	212	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	150	152	first strand
Strand 2	O	179	180	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	156	157	first strand
Strand 2	O	174	176	anti-parallel
Strand 3	O	210	212	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	150	152	first strand
Strand 2	P	179	180	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	156	157	first strand
Strand 2	P	174	176	anti-parallel
Strand 3	P	210	212	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	150	152	first strand
Strand 2	R	179	180	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	156	157	first strand
Strand 2	R	174	176	anti-parallel
Strand 3	R	210	212	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	150	152	first strand
Strand 2	T	179	180	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	156	157	first strand
Strand 2	T	174	176	anti-parallel
Strand 3	T	210	212	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	150	152	first strand
Strand 2	U	179	180	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	156	157	first strand
Strand 2	U	174	176	anti-parallel
Strand 3	U	210	212	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	150	152	first strand
Strand 2	W	179	180	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	156	157	first strand
Strand 2	W	174	176	anti-parallel
Strand 3	W	210	212	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	150	152	first strand
Strand 2	X	179	180	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	156	157	first strand
Strand 2	X	174	176	anti-parallel
Strand 3	X	210	212	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	150	152	first strand
Strand 2	Z	179	180	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	156	157	first strand
Strand 2	Z	174	176	anti-parallel
Strand 3	Z	210	212	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	150	152	first strand
Strand 2	a	179	180	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	156	157	first strand
Strand 2	a	174	176	anti-parallel
Strand 3	a	210	212	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	150	152	first strand
Strand 2	c	179	180	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	156	157	first strand
Strand 2	c	174	176	anti-parallel
Strand 3	c	210	212	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	150	152	first strand
Strand 2	d	179	180	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	156	157	first strand
Strand 2	d	174	176	anti-parallel
Strand 3	d	210	212	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	150	152	first strand
Strand 2	f	179	180	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	156	157	first strand
Strand 2	f	174	176	anti-parallel
Strand 3	f	210	212	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	150	152	first strand
Strand 2	g	179	180	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	156	157	first strand
Strand 2	g	174	176	anti-parallel
Strand 3	g	210	212	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SD5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SD5