Analysis of interatomic Contacts of Structural Units in PDB entry:
6SD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SD8 entry

There are 2 chains in PDB entry 6SD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 ASN 3LEU 505
A
 ASN 3LEU 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6SD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
X
18 29Right-handed alpha
Helix 2
AA2
X
30 49Right-handed alpha
Helix 3
AA3
X
50 62Right-handed alpha
Helix 4
AA4
X
82 95Right-handed alpha
Helix 5
AA5
X
98 107Right-handed 310
Helix 6
AA6
X
108 122Right-handed alpha
Helix 7
AA7
X
123 125Right-handed 310
Helix 8
AA8
X
128 146Right-handed alpha
Helix 9
AA9
X
147 159Right-handed alpha
Helix 10
AB1
X
212 216Right-handed 310
Helix 11
AB2
X
231 235Right-handed 310
Helix 12
AB3
X
286 293Right-handed alpha
Helix 13
AB4
X
294 322Right-handed alpha
Helix 14
AB5
X
334 367Right-handed alpha
Helix 15
AB6
X
371 404Right-handed alpha
Helix 16
AB7
X
405 414Right-handed 310
Helix 17
AB8
X
415 423Right-handed alpha
Helix 18
AB9
X
424 427Right-handed 310
Helix 19
AC1
X
431 445Right-handed alpha
Helix 20
AC2
X
447 459Right-handed alpha
Helix 21
AC3
X
462 474Right-handed alpha
Helix 22
AC4
X
476 483Right-handed alpha
Helix 23
AC5
X
483 503Right-handed alpha
Helix 24
AC6
A
18 29Right-handed alpha
Helix 25
AC7
A
30 48Right-handed alpha
Helix 26
AC8
A
50 62Right-handed alpha
Helix 27
AC9
A
82 95Right-handed alpha
Helix 28
AD1
A
98 107Right-handed 310
Helix 29
AD2
A
108 122Right-handed alpha
Helix 30
AD3
A
123 125Right-handed 310
Helix 31
AD4
A
128 146Right-handed alpha
Helix 32
AD5
A
147 159Right-handed alpha
Helix 33
AD6
A
231 235Right-handed 310
Helix 34
AD7
A
286 322Right-handed alpha
Helix 35
AD8
A
334 367Right-handed alpha
Helix 36
AD9
A
371 404Right-handed alpha
Helix 37
AE1
A
405 414Right-handed 310
Helix 38
AE2
A
415 423Right-handed alpha
Helix 39
AE3
A
424 427Right-handed 310
Helix 40
AE4
A
431 445Right-handed alpha
Helix 41
AE5
A
447 459Right-handed alpha
Helix 42
AE6
A
462 474Right-handed alpha
Helix 43
AE7
A
476 483Right-handed alpha
Helix 44
AE8
A
483 503Right-handed alpha
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There are 8 sheets in PDB entry 6SD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
65 69first strand
Strand 2
X
75 80anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
169 172first strand
Strand 2
X
218 225parallel
Strand 3
X
188 191parallel
Strand 4
X
202 211anti-parallel
Strand 5
X
269 281anti-parallel
Strand 6
X
252 257anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
169 172first strand
Strand 2
X
218 225parallel
Strand 3
X
236 241anti-parallel
Strand 4
X
269 281anti-parallel
Strand 5
X
252 257anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
325 326first strand
Strand 2
X
329 330anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
75 80anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
218 225parallel
Strand 3
A
188 191parallel
Strand 4
A
202 211anti-parallel
Strand 5
A
269 281anti-parallel
Strand 6
A
252 257anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
218 225parallel
Strand 3
A
236 241anti-parallel
Strand 4
A
269 281anti-parallel
Strand 5
A
252 257anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
329 330anti-parallel
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