Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SDB entry

There are 5 chains in PDB entry 6SDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 195
B
 GLY -1GLY 194
C
 MET 1GLU 99
D
 GLU 99GLU 195
E
 MET 1GLN 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6SDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 50Right-handed 310
Helix 2
AA2
A
70 74Right-handed 310
Helix 3
AA3
A
166 170Right-handed 310
Helix 4
AA4
B
48 50Right-handed 310
Helix 5
AA5
B
70 74Right-handed 310
Helix 6
AA6
B
166 170Right-handed 310
Helix 7
AA7
C
48 50Right-handed 310
Helix 8
AA8
C
70 74Right-handed 310
Helix 9
AA9
D
166 170Right-handed 310
Helix 10
AB1
E
48 50Right-handed 310
Helix 11
AB2
E
70 74Right-handed 310
Helix 12
AB3
E
166 170Right-handed 310
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There are 16 sheets in PDB entry 6SDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
23 32anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
54 58anti-parallel
Strand 5
B
182 193anti-parallel
Strand 6
B
112 115parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
23 32anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
54 58anti-parallel
Strand 5
B
182 193anti-parallel
Strand 6
B
171 179anti-parallel
Strand 7
B
133 138anti-parallel
Strand 8
B
141 142anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
86 97parallel
Strand 3
C
86 97anti-parallel
Strand 4
C
15 18parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
75 83anti-parallel
Strand 4
A
86 97anti-parallel
Strand 5
C
86 97anti-parallel
Strand 6
C
75 83anti-parallel
Strand 7
C
36 41anti-parallel
Strand 8
C
45 46anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 107first strand
Strand 2
A
120 129anti-parallel
Strand 3
A
157 162anti-parallel
Strand 4
A
149 154anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
182 193parallel
Strand 3
A
171 179anti-parallel
Strand 4
A
133 138anti-parallel
Strand 5
A
141 142anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 10first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
54 58anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
86 97parallel
Strand 3
B
75 83anti-parallel
Strand 4
B
36 41anti-parallel
Strand 5
B
45 46anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 107first strand
Strand 2
B
120 129anti-parallel
Strand 3
B
157 162anti-parallel
Strand 4
B
149 154anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 10first strand
Strand 2
C
23 32anti-parallel
Strand 3
C
61 66anti-parallel
Strand 4
C
54 58anti-parallel
Strand 5
D
183 193anti-parallel
Strand 6
D
112 115parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 10first strand
Strand 2
C
23 32anti-parallel
Strand 3
C
61 66anti-parallel
Strand 4
C
54 58anti-parallel
Strand 5
D
183 193anti-parallel
Strand 6
D
171 178anti-parallel
Strand 7
D
133 138anti-parallel
Strand 8
D
141 142anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
101 107first strand
Strand 2
D
120 129anti-parallel
Strand 3
D
157 162anti-parallel
Strand 4
D
149 154anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 10first strand
Strand 2
E
23 32anti-parallel
Strand 3
E
61 66anti-parallel
Strand 4
E
54 58anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 18first strand
Strand 2
E
86 97parallel
Strand 3
E
75 83anti-parallel
Strand 4
E
36 41anti-parallel
Strand 5
E
45 46anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
101 107first strand
Strand 2
E
120 129anti-parallel
Strand 3
E
157 162anti-parallel
Strand 4
E
149 154anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
112 115first strand
Strand 2
E
182 193parallel
Strand 3
E
171 179anti-parallel
Strand 4
E
133 138anti-parallel
Strand 5
E
141 142anti-parallel
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