Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6SDG entry

There are 4 chains in PDB entry 6SDG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 24	ASN 360
B	ILE 24	SER 361
C	T 0	A 20
D	T 0	A 20

There are 15 helices in PDB entry 6SDG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	34	Right-handed alpha
Helix 2	AA2	A	49	61	Right-handed alpha
Helix 3	AA3	A	134	139	Right-handed alpha
Helix 4	AA4	A	147	154	Right-handed alpha
Helix 5	AA5	A	197	205	Right-handed alpha
Helix 6	AA6	A	242	260	Right-handed alpha
Helix 7	AA7	A	281	290	Right-handed alpha
Helix 8	AA8	B	25	34	Right-handed alpha
Helix 9	AA9	B	49	61	Right-handed alpha
Helix 10	AB1	B	134	139	Right-handed alpha
Helix 11	AB2	B	147	154	Right-handed alpha
Helix 12	AB3	B	197	205	Right-handed alpha
Helix 13	AB4	B	242	260	Right-handed alpha
Helix 14	AB5	B	281	290	Right-handed alpha
Helix 15	AB6	B	352	356	Right-handed 310

There are 7 sheets in PDB entry 6SDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	268	first strand
Strand 2	A	96	104	anti-parallel
Strand 3	A	78	89	anti-parallel
Strand 4	A	45	48	anti-parallel
Strand 5	A	278	280	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	212	217	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	166	172	parallel
Strand 5	A	178	186	anti-parallel
Strand 6	A	191	194	anti-parallel
Strand 7	A	144	146	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	351	first strand
Strand 2	A	335	339	anti-parallel
Strand 3	A	312	319	anti-parallel
Strand 4	A	297	300	anti-parallel
Strand 5	A	357	358	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	268	first strand
Strand 2	B	96	104	anti-parallel
Strand 3	B	78	89	anti-parallel
Strand 4	B	45	48	anti-parallel
Strand 5	B	278	280	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	132	first strand
Strand 2	B	212	216	anti-parallel
Strand 3	B	224	228	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	191	194	anti-parallel
Strand 3	B	178	186	anti-parallel
Strand 4	B	166	172	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	351	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	312	319	anti-parallel
Strand 4	B	297	300	anti-parallel
Strand 5	B	357	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6SDG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDG