Analysis of interatomic Contacts of Structural Units in PDB entry:
6SDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6SDK entry

There are 4 chains in PDB entry 6SDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 20ASN 218
B
 MSE 20GLN 217
C
 MSE 20ASN 218
D
 MSE 20ASN 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 6SDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 58Right-handed alpha
Helix 2
AA2
A
77 87Right-handed alpha
Helix 3
AA3
A
100 114Right-handed alpha
Helix 4
AA4
A
119 135Right-handed alpha
Helix 5
AA5
A
137 146Right-handed alpha
Helix 6
AA6
A
148 159Right-handed alpha
Helix 7
AA7
A
162 171Right-handed alpha
Helix 8
AA8
A
175 184Right-handed alpha
Helix 9
AA9
A
187 189Right-handed 310
Helix 10
AB1
A
190 202Right-handed alpha
Helix 11
AB2
A
204 217Right-handed alpha
Helix 12
AB3
B
43 58Right-handed alpha
Helix 13
AB4
B
77 87Right-handed alpha
Helix 14
AB5
B
100 114Right-handed alpha
Helix 15
AB6
B
119 135Right-handed alpha
Helix 16
AB7
B
137 146Right-handed alpha
Helix 17
AB8
B
148 158Right-handed alpha
Helix 18
AB9
B
159 161Right-handed 310
Helix 19
AC1
B
162 171Right-handed alpha
Helix 20
AC2
B
175 183Right-handed alpha
Helix 21
AC3
B
187 189Right-handed 310
Helix 22
AC4
B
190 202Right-handed alpha
Helix 23
AC5
B
204 217Right-handed alpha
Helix 24
AC6
C
43 58Right-handed alpha
Helix 25
AC7
C
77 88Right-handed alpha
Helix 26
AC8
C
100 114Right-handed alpha
Helix 27
AC9
C
119 134Right-handed alpha
Helix 28
AD1
C
137 146Right-handed alpha
Helix 29
AD2
C
148 159Right-handed alpha
Helix 30
AD3
C
162 171Right-handed alpha
Helix 31
AD4
C
175 183Right-handed alpha
Helix 32
AD5
C
187 189Right-handed 310
Helix 33
AD6
C
190 202Right-handed alpha
Helix 34
AD7
C
204 216Right-handed alpha
Helix 35
AD8
D
43 58Right-handed alpha
Helix 36
AD9
D
77 87Right-handed alpha
Helix 37
AE1
D
100 114Right-handed alpha
Helix 38
AE2
D
119 135Right-handed alpha
Helix 39
AE3
D
137 146Right-handed alpha
Helix 40
AE4
D
148 158Right-handed alpha
Helix 41
AE5
D
159 161Right-handed 310
Helix 42
AE6
D
162 171Right-handed alpha
Helix 43
AE7
D
175 183Right-handed alpha
Helix 44
AE8
D
187 189Right-handed 310
Helix 45
AE9
D
190 202Right-handed alpha
Helix 46
AF1
D
204 218Right-handed alpha
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There are 2 sheets in PDB entry 6SDK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
72 76parallel
Strand 3
A
63 67anti-parallel
Strand 4
A
91 96parallel
Strand 5
A
21 27anti-parallel
Strand 6
B
21 27anti-parallel
Strand 7
B
91 96anti-parallel
Strand 8
B
63 67parallel
Strand 9
B
72 76anti-parallel
Strand 10
B
31 32parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
72 76parallel
Strand 3
C
63 67anti-parallel
Strand 4
C
91 96parallel
Strand 5
C
21 27anti-parallel
Strand 6
D
21 27anti-parallel
Strand 7
D
91 96anti-parallel
Strand 8
D
63 67parallel
Strand 9
D
72 76anti-parallel
Strand 10
D
31 32parallel
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